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Changes for page 05. Data processing

Last modified by tabermah on 2024-12-11 11:17
From version 35.1
edited by tabermah
on 2024-09-23 16:45
Change comment: There is no comment for this version
To version 33.1
edited by tabermah
on 2024-09-23 16:39
Change comment: There is no comment for this version

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81 81  The processing folders contain two folders, 'xdsapp' and 'manual'. 'Manual' contains a template for manual processing having all the correct parameters. However, to shorten the processing time and make use of the computational structure, reprocessing your data on the maxwell nodes should be done by using a script to queue the jobs in slurm:
82 82  
83 83  * a template scripts can be found at /asap3/petra3/gpfs/common/p11/processing_scripts/
84 -** (% style="color: rgb(0,0,0);text-decoration: none;" %)xds_users.sh For (% style="color: rgb(0, 0, 0); text-decoration: none; color: rgb(255, 0, 0)" %)external users
84 +** (% style="color: rgb(0,0,0);text-decoration: none;" %)xds_users.sh For (% style="color: rgb(0, 0, 0); text-decoration: none; color: rgb(255, 0, 0)" %)external (% style="color: rgb(0, 0, 0); text-decoration: none; color: rgb(255, 0, 0); color: rgb(0, 0, 0); text-decoration: none; color: rgb(255, 0, 0)" %)a(% style="color: rgb(0, 0, 0); text-decoration: none; color: rgb(255, 0, 0); color: rgb(0, 0, 0); text-decoration: none; color: rgb(255, 0, 0); color: rgb(255, 0, 0)" %)cademic (% style="color: rgb(0, 0, 0); text-decoration: none; color: rgb(255, 0, 0)" %)users
85 85  ** xds_inhouse.sh For (% style="color: rgb(255,0,0);" %)in-house users
86 -* (% style="color: rgb(0,0,0);" %)differences on the scripts are on the partition used for the processing (i.e. //pscpu// should be used for internal users of Photon Science and //psxcpu// for external users)
86 +* (% style="color: rgb(0,0,0);" %)differences on the scripts are on the partition used for the processing (i.e. //pscpu// should be used for internal users of Photon Science and //psxcpu// for external academic users)
87 87  * (% style="color: rgb(0,0,0);" %)copy the script to the folder where you run the processing
88 88  * (% style="color: rgb(0,0,0);" %)launch the script by typing sbatch xds(% style="color: rgb(0, 0, 0); color: rgb(255, 0, 0)" %)_(% style="color: rgb(0, 0, 0); color: rgb(0, 0, 0); text-decoration: none; color: rgb(255, 0, 0)" %)name_of_the_script(% style="color: rgb(0, 0, 0); color: rgb(0, 0, 0); text-decoration: none" %).sh (e.g., //sbatch xds_users.sh //for external users )
89 89  * (% style="color: rgb(0,0,0);" %)the script will find a free node for your job to run fast
Confluence.Code.ConfluencePageClass[0]
Id
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1 -379128887
1 +379128863
URL
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1 -https://confluence.desy.de/spaces/11/pages/379128887/11. Data processing
1 +https://confluence.desy.de/spaces/11/pages/379128863/11. Data processing