Changes for page CFEL TapeDrive: Serial Crystallography
Last modified by chatzies on 2025-11-27 11:35
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... ... @@ -1,7 +2,17 @@ 1 -[[image:attach:TapeDrive_beschriftet.PNG||height="400"]][[image:attach:TapeDrive scheme.png||height="400"]] 2 2 3 -**14.1 Revert from Crystallography to TapeDrive (P11 staff/CFEL)** 4 4 3 +{{toc/}} 4 + 5 +[[image:attach:TapeDrive_beschriftet-tile.jpg||height="400"]] 6 + 7 +\\ 8 + 9 +\\ 10 + 11 +\\ 12 + 13 +=== {{id name="14.SerialCrystallography:CFELTapeDrive-14.1RevertfromCrystallographytoTapeDrive(P11staff/CFEL)"/}}**14.1 Revert from Crystallography to TapeDrive (P11 staff/CFEL)** === 14 + 5 5 * remove vortex 6 6 * beamstop to out-position? 7 7 * remove goniometer. The airbearing should be stopped (p11/servermotor/eh.1.01) ... ... @@ -50,7 +50,7 @@ 50 50 51 51 \\ 52 52 53 -**14.2 Sample characteristics and preparation** 63 +=== {{id name="14.SerialCrystallography:CFELTapeDrive-14.2Samplecharacteristicsandpreparation"/}}**14.2 Sample characteristics and preparation** === 54 54 55 55 suspension of microcrystals, **at least** 200 µL with 20% crystal density(more is always better), size range: 2-30 µm, **tip:** bring some mother liquor for washing, filtering, diluting etc. 56 56 ... ... @@ -62,36 +62,106 @@ 62 62 63 63 \\ 64 64 65 -**14.3 Connecting sample to ElveFlow, sample exchange 66 -** 75 +=== {{id name="14.SerialCrystallography:CFELTapeDrive-14.3ConnectingsampletoElveFlow,sampleexchange"/}}**14.3 Connecting sample to ElveFlow, sample exchange 76 +** === 67 67 68 - [[image:attach:20211201_095033.jpg||thumbnail="true"height="250"]][[image:attach:20211201_095205.jpg||height="250"]][[image:attach:20211201_095232.jpg||height="250"]]78 +After filtration, screw the ElveFlow connector to your Eppendorf or Falcon tube. Make sure that the yellow-ish line goes to the bottom of your tube. You can adjust the length by unscrewing the blue fitting on top and pushing/pulling the yellow-ish line. **Don't forget to tigthen the blue fitting afterwards!** 69 69 80 +Be aware to which channel and nozzle line your sample is connected. 81 + 82 + Red → Channel 1, crystal line (nozzle capillary without marks) 83 + 84 + Green → Channel 2, substrate line (nozzle capillary is marked in black) 85 + 86 +[[image:attach:20211201_095033.jpg||thumbnail="true" height="250"]] 87 + 70 70 \\ 71 71 72 72 \\ 73 73 74 -**14.4 TapeDrive operation 75 -** 92 +=== {{id name="14.SerialCrystallography:CFELTapeDrive-14.4TapeDriveoperation"/}}**14.4 TapeDrive operation 93 +** === 76 76 77 -The TapeDrive is controlled through kamzik. To open kamzik, start the server. A terminal will open ,shortly after a small window.95 +The TapeDrive is controlled through kamzik. To open kamzik, start the server. A terminal will open and shortly after a small window. 78 78 Now start the client. Same thing, a terminal will open, shortly after a small window. 79 79 80 80 Click 'Devices' in the **client session** to open the control window. 81 81 [[image:attach:screen.PNG||height="250"]][[image:attach:server client.PNG||height="250"]] 82 82 83 -* **Tape:** 84 -** Click on the 'main tape' icon 85 -** Change the velocity by typing anything from 0.3-3.0 mm/s 86 -** Common velocity is 1.0-1.5 mm/s 87 -** [[image:attach:kamzik_tape.PNG||height="400"]] 101 +**Tape** 88 88 103 +* Click on the 'main tape' icon 104 +* Change the velocity by typing anything from **0.3-3.0 mm/s** 105 +* Common velocity is 1.0-1.5 mm/s 106 +* kamzik displays the used tape in m and %. At 98% the tape will automatically stop since the rolls need to be exchanged at this point. 89 89 \\ 108 +* [[image:attach:kamzik_tape.PNG||height="400"]] 90 90 110 +==== {{id name="14.SerialCrystallography:CFELTapeDrive-Samplenozzle:"/}}**Sample nozzle:** ==== 111 + 112 +* Click an the 'nozzle' icon. 113 +* ((( 114 +The nozzle position can be adjusted in xyz by clicking on the arrows up and down. (Double arrow = 10 steps). Step size can be varied, 1mm steps are rather big and should be used carefully. 115 +The absolute position is **not calibrated** and therefore changes after each restart of kamzik. 116 +\\(% style="color: rgb(255,0,0);" %)**!!! **(% style="color: rgb(255, 0, 0); color: rgb(0, 0, 0)" %)**During data collection make sure in which direction you are moving, do not move nozzle into beam**(% style="color: rgb(255,0,0);" %)** !!!**(%%) 117 +\\Adjust the nozzle position by eye until it nearly touches the tape and roughly meets the X-ray interaction point. Then, move to the control hutch to use the on-axis microscope for fine adjustment. Move the nozzle tip to the beam position (red X) and write down the absolut nozzle position. From there move the nozzle in +x to your desired distance.Different distances combined with the tape speed result in several delay times for time-resolved experiments. 118 + 119 +(% class="wrapped" %) 120 +|=((( 91 91 \\ 122 +)))|=((( 123 +direction 124 +)))|=((( 125 +recommended step size 126 +for visual adjustment 127 +)))|=(% colspan="1" %)((( 128 +recommended step size 129 +during data collection 130 +))) 131 +|((( 132 ++x 133 +)))|((( 134 +away from X-ray interaction point 135 +)))|((( 136 +1.0 - 0.5 mm 137 +)))|(% colspan="1" %)((( 138 +0.1 - 0.2 mm 139 +))) 140 +|((( 141 ++y 142 +)))|((( 143 +up 144 +)))|((( 145 +1.0 - 0.5 mm 146 +)))|(% colspan="1" %)((( 147 +0.1 - 0.2 mm 148 +))) 149 +|((( 150 ++z 151 +)))|((( 152 +towards detector tower, away from tape 153 +)))|((( 154 +0.5 - 0.2 mm 155 +)))|(% colspan="1" %)((( 156 +0.1 - 0.2 mm 157 +be careful with -z, tape could be pushed out of focus 158 +))) 92 92 160 +** 161 +\\** 162 +))) 163 +* [[image:attach:kamzik_nozzle.PNG||height="400"]] 164 + 165 +==== {{id name="14.SerialCrystallography:CFELTapeDrive-Temperaturecontrol/Chiller"/}}**Temperature control/Chiller** ==== 166 + 93 93 \\ 94 94 169 +\\ 170 + 171 +\\ 172 + 173 +\\ 174 + 95 95 Once the hutch is interlocked, set remote control to the TapeDrive laptop by opening a terminal and executing the following command: 96 96 97 97 xfreerdp +clipboard /size:1920x1080 /u:Cfelusr /v:cfeld-pcx22611 ... ... @@ -102,10 +102,24 @@ 102 102 103 103 \\ 104 104 105 -**14.5 Tape roll exchange** 185 +==== {{id name="14.SerialCrystallography:CFELTapeDrive-14.5Taperollexchange"/}}**14.5 Tape roll exchange** ==== 106 106 107 - **[[image:attach:20211201_094111.jpg||height="250"]][[image:attach:20211201_094101.jpg||height="250"]]**187 +The tape stops automatically at 98% used length, if you need to change the rolls for orther reasons, stop the tape (velocity = 0.0 mm/s). 108 108 189 +* Remove the (almost) empty feeder roll by pulling it upwards. 190 +* Cut the tape with some cm overlap to glue to the new roll. **Do not discard empty roll!** 191 +* Get a new tape roll (bottom left on the cart). **Polypropylen 15 µm** 192 +* Cut the first cm of the new tape roll, directly before the black sticky part. 193 +* Use this sticky part to attach the end of the old tape to the new roll. Place new roll on roll holder. 194 +* Open magnetic tape stabilizer. 195 +* Start the tape (3mm/s). Once the connetion side (black sticky part) has arrived at the collector roll, stop the tape (0mm/s). 196 +* Again, cut the tape directly in front of the black mark. Replace the the old roll with the **empty **one. Old roll can be discarded. 197 +* Attach new tape to the empty roll by using the black sticky part. 198 +* Close tape stabilizer. 199 + 200 +**[[image:attach:20211201_094101.jpg||height="250"]][[image:attach:20211201_094111.jpg||height="250"]] 201 +** 202 + 109 109 \\ 110 110 111 111 \\
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... ... @@ -1,1 +1,1 @@ 1 -23503 77091 +235039466 - URL
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... ... @@ -1,1 +1,1 @@ 1 -https://confluence.desy.de/spaces/11/pages/23503 7709/14. Serial Crystallography: CFEL TapeDrive1 +https://confluence.desy.de/spaces/11/pages/235039466/14. Serial Crystallography: CFEL TapeDrive