Changes for page CFEL TapeDrive: Serial Crystallography
Last modified by chatzies on 2025-11-27 11:35
Summary
-
Page properties (1 modified, 0 added, 0 removed)
-
Objects (1 modified, 0 added, 0 removed)
Details
- Page properties
-
- Content
-
... ... @@ -1,17 +1,7 @@ 1 +[[image:attach:TapeDrive_beschriftet.PNG||height="400"]][[image:attach:TapeDrive scheme.png||height="400"]] 1 1 3 +**14.1 Revert from Crystallography to TapeDrive (P11 staff/CFEL)** 2 2 3 -{{toc/}} 4 - 5 -[[image:attach:TapeDrive_beschriftet-tile.jpg||height="400"]] 6 - 7 -\\ 8 - 9 -\\ 10 - 11 -\\ 12 - 13 -=== {{id name="14.SerialCrystallography:CFELTapeDrive-14.1RevertfromCrystallographytoTapeDrive(P11staff/CFEL)"/}}**14.1 Revert from Crystallography to TapeDrive (P11 staff/CFEL)** === 14 - 15 15 * remove vortex 16 16 * beamstop to out-position? 17 17 * remove goniometer. The airbearing should be stopped (p11/servermotor/eh.1.01) ... ... @@ -60,7 +60,7 @@ 60 60 61 61 \\ 62 62 63 - === {{id name="14.SerialCrystallography:CFELTapeDrive-14.2Samplecharacteristicsandpreparation"/}}**14.2 Sample characteristics and preparation**===53 +**14.2 Sample characteristics and preparation** 64 64 65 65 suspension of microcrystals, **at least** 200 µL with 20% crystal density(more is always better), size range: 2-30 µm, **tip:** bring some mother liquor for washing, filtering, diluting etc. 66 66 ... ... @@ -72,51 +72,42 @@ 72 72 73 73 \\ 74 74 75 - === {{id name="14.SerialCrystallography:CFELTapeDrive-14.3ConnectingsampletoElveFlow,sampleexchange"/}}**14.3 Connecting sample to ElveFlow, sample exchange76 -** ===65 +**14.3 Connecting sample to ElveFlow, sample exchange 66 +** 77 77 78 - After filtration, screwthe ElveFlowconnector to your Eppendorf or Falcontube.Make sure that theyellow-ish linegoes to the bottomof your tube. You can adjustthe lengthby unscrewingthe blue fittingontopand pushing/pullingtheyellow-ish line. **Don't forget to tigthenthe blue fitting afterwards!**68 +[[image:attach:20211201_095033.jpg||thumbnail="true" height="250"]][[image:attach:20211201_095205.jpg||height="250"]][[image:attach:20211201_095232.jpg||height="250"]] 79 79 80 -Be aware to which channel and nozzle line your sample is connected. 81 - 82 - Red → Channel 1, crystal line (nozzle capillary without marks) 83 - 84 - Green → Channel 2, substrate line (nozzle capillary is marked in black) 85 - 86 -[[image:attach:20211201_095033.jpg||thumbnail="true" height="250"]] 87 - 88 88 \\ 89 89 90 90 \\ 91 91 92 - === {{id name="14.SerialCrystallography:CFELTapeDrive-14.4TapeDriveoperation"/}}**14.4 TapeDrive operation93 -** ===74 +**14.4 TapeDrive operation 75 +** 94 94 95 -The TapeDrive is controlled through kamzik. To open kamzik, start the server. A terminal will open andshortly after a small window.77 +The TapeDrive is controlled through kamzik. To open kamzik, start the server. A terminal will open, shortly after a small window. 96 96 Now start the client. Same thing, a terminal will open, shortly after a small window. 97 97 98 98 Click 'Devices' in the **client session** to open the control window. 99 99 [[image:attach:screen.PNG||height="250"]][[image:attach:server client.PNG||height="250"]] 100 100 101 -**Tape** 83 +* **Tape:** 84 +** Click on the 'main tape' icon 85 +** Change the velocity by typing anything from 0.3-3.0 mm/s 86 +** Common velocity is 1.0-1.5 mm/s 87 +** kamzik displays the used tape in m and %. At 98% the tape will automatically stop since the rolls need to be exchanged at this point. 88 +** [[image:attach:kamzik_tape.PNG||height="400"]] 102 102 103 -* Click on the 'main tape' icon 104 -* Change the velocity by typing anything from **0.3-3.0 mm/s** 105 -* Common velocity is 1.0-1.5 mm/s 106 -* kamzik displays the used tape in m and %. At 98% the tape will automatically stop since the rolls need to be exchanged at this point. 107 107 \\ 108 -* [[image:attach:kamzik_tape.PNG||height="400"]] 109 109 110 -==== {{id name="14.SerialCrystallography:CFELTapeDrive-Samplenozzle:"/}}**Sample nozzle:** ==== 111 - 112 -* Click an the 'nozzle' icon. 113 -* ((( 114 -The nozzle position can be adjusted in xyz by clicking on the arrows up and down. (Double arrow = 10 steps). Step size can be varied, 1mm steps are rather big and should be used carefully. 92 +* **Sample nozzle:** 93 +** Click an the 'nozzle' icon. 94 +** ((( 95 +The nozzle position can be adjusted in xyz by clicking on the arrows up and down. Step size can be varied, 1mm steps are rather big and should be used carefully, for y-movement always use a stepsize <= 0.5mm. 115 115 The absolute position is **not calibrated** and therefore changes after each restart of kamzik. 116 -\\(% style="color: rgb(255,0,0);" %)**!!! **(% style="color: rgb(255, 0, 0); color: rgb(0, 0, 0)" %)**During data collection make sure in which direction you are moving, do not move nozzle into beam**(% style="color: rgb(255,0,0);" %)** !!!**(%%) 117 -\\Adjust the nozzle position by eye until it nearly touches the tape and roughly meets the X-ray interaction point. Then, move to the control hutch to use the on-axis microscope for fine adjustment. Move the nozzle tip to the beam position (red X) and write down the absolut nozzle position. From there move the nozzle in +x to your desired distance.Different distances combined with the tape speed result in several delay times for time-resolved experiments. 97 ++x right, away from X-ray interaction point 98 ++y up 99 ++z towards detector tower, away from the tape 118 118 119 -(% class="wrapped" %) 120 120 |=((( 121 121 \\ 122 122 )))|=((( ... ... @@ -131,7 +131,7 @@ 131 131 |((( 132 132 +x 133 133 )))|((( 134 -away from X-ray interaction point 115 +right, away from X-ray interaction point 135 135 )))|((( 136 136 1.0 - 0.5 mm 137 137 )))|(% colspan="1" %)((( ... ... @@ -157,13 +157,11 @@ 157 157 be careful with -z, tape could be pushed out of focus 158 158 ))) 159 159 160 -** 141 +(% style="color: rgb(255,0,0);" %)**!!! **(% style="color: rgb(255, 0, 0); color: rgb(0, 0, 0)" %)**During data collection make sure in which direction you are moving, do not move nozzle into beam**(% style="color: rgb(255,0,0);" %)** !!!**(%%)** 161 161 \\** 162 162 ))) 163 -* [[image:attach:kamzik_nozzle.PNG||height="400"]] 144 +** [[image:attach:kamzik_nozzle.PNG||height="400"]] 164 164 165 -==== {{id name="14.SerialCrystallography:CFELTapeDrive-Temperaturecontrol/Chiller"/}}**Temperature control/Chiller** ==== 166 - 167 167 \\ 168 168 169 169 \\ ... ... @@ -170,8 +170,6 @@ 170 170 171 171 \\ 172 172 173 -\\ 174 - 175 175 Once the hutch is interlocked, set remote control to the TapeDrive laptop by opening a terminal and executing the following command: 176 176 177 177 xfreerdp +clipboard /size:1920x1080 /u:Cfelusr /v:cfeld-pcx22611 ... ... @@ -182,24 +182,10 @@ 182 182 183 183 \\ 184 184 185 - ==== {{id name="14.SerialCrystallography:CFELTapeDrive-14.5Taperollexchange"/}}**14.5 Tape roll exchange**====162 +**14.5 Tape roll exchange** 186 186 187 - The tapestopsautomatically at98% used length, if you need to changethe rolls for orther reasons, stopthetape (velocity=0.0 mm/s).164 +**[[image:attach:20211201_094111.jpg||height="250"]][[image:attach:20211201_094101.jpg||height="250"]]** 188 188 189 -* Remove the (almost) empty feeder roll by pulling it upwards. 190 -* Cut the tape with some cm overlap to glue to the new roll. **Do not discard empty roll!** 191 -* Get a new tape roll (bottom left on the cart). **Polypropylen 15 µm** 192 -* Cut the first cm of the new tape roll, directly before the black sticky part. 193 -* Use this sticky part to attach the end of the old tape to the new roll. Place new roll on roll holder. 194 -* Open magnetic tape stabilizer. 195 -* Start the tape (3mm/s). Once the connetion side (black sticky part) has arrived at the collector roll, stop the tape (0mm/s). 196 -* Again, cut the tape directly in front of the black mark. Replace the the old roll with the **empty **one. Old roll can be discarded. 197 -* Attach new tape to the empty roll by using the black sticky part. 198 -* Close tape stabilizer. 199 - 200 -**[[image:attach:20211201_094101.jpg||height="250"]][[image:attach:20211201_094111.jpg||height="250"]] 201 -** 202 - 203 203 \\ 204 204 205 205 \\
- Confluence.Code.ConfluencePageClass[0]
-
- Id
-
... ... @@ -1,1 +1,1 @@ 1 -235039 4661 +235037729 - URL
-
... ... @@ -1,1 +1,1 @@ 1 -https://confluence.desy.de/spaces/11/pages/235039 466/14. Serial Crystallography: CFEL TapeDrive1 +https://confluence.desy.de/spaces/11/pages/235037729/14. Serial Crystallography: CFEL TapeDrive