Changes for page CFEL TapeDrive: Serial Crystallography

Last modified by chatzies on 2025-11-27 11:35

From 36.1 to 37.1 From 43.1 to 44.1

From version 37.1

edited by ahenkel
on 2021-12-12 22:56

Change comment: There is no comment for this version

To version 43.1

edited by ahenkel
on 2021-12-12 23:49

Change comment: There is no comment for this version

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@@ -1,10 +1,6 @@
  {{layout}}
  {{layout-section ac:type="single"}}
  {{layout-cell}}
--
--
--{{toc/}}
--
  [[image:attach:TapeDrive_beschriftet-tile.jpg||height="400"]]
  \\
@@ -123,7 +123,6 @@
  (% style="color: rgb(255,0,0);" %)**!!! **(% style="color: rgb(255, 0, 0); color: rgb(0, 0, 0)" %)**During data collection make sure in which direction you are moving, do not move nozzle into beam**(% style="color: rgb(255,0,0);" %)** !!!**(%%)
  \\Adjust the nozzle position by eye until it nearly touches the tape and roughly meets the X-ray interaction point. Then, move to the control hutch to use the on-axis microscope for fine adjustment. Move the nozzle tip to the beam position (red X) and write down the absolut nozzle position. From there move the nozzle in +x to your desired distance.Different distances combined with the tape speed result in several delay times for time-resolved experiments.
--(% class="wrapped" %)
  |=(((
  \\
  )))|=(((
@@ -217,22 +217,79 @@
  \\
  === {{id name="14.SerialCrystallography:CFELTapeDrive-14.6Nozzleexchange"/}}**14.6 Nozzle exchange** ===
++{{/layout-cell}}
++{{/layout-section}}
--\\
++{{layout-section ac:type="single"}}
++{{layout-cell}}
++=== {{id name="14.SerialCrystallography:CFELTapeDrive-14.7Chopper"/}}**14.7 Chopper** ===
--=== {{id name="14.SerialCrystallography:CFELTapeDrive-14.7Datacollection"/}}**14.7 Data collection** ===
++start chopper gui from terminal:
++(% class="code" %)
++(((
++            cd /gpfs/local/shared/ChopperControl
++)))
++
++(% class="code" %)
++(((
++            python chopperControl.py
++)))
++{{/layout-cell}}
++{{/layout-section}}
++
++{{layout-section ac:type="two_equal"}}
++{{layout-cell}}
++                     [[image:attach:20211212_233140.jpg||height="250"]]
++{{/layout-cell}}
++
++{{layout-cell}}
++**Chopper → no Chopper**
++
++* decrease frequency by max. 10 Hz steps\\
++** click arrow down 10x, "Set", arrow down 10x, "Set", ....
++* at frequency = 10 Hz, click "Stop"
++* set "Hole" to <none> (% style="color: rgb(255,0,0);" %)//Takes some minutes//
++
++(% style="color: rgb(0,0,0);" %)**no Chopper → Chopper**
++
++* (% style="color: rgb(0,0,0);" %)set "Hole" to <Inner hole (largest)> (% style="color: rgb(255,0,0);" %)//Takes some minutes//
++* (% style="color: rgb(0,0,0);" %)increase frequency by max. 10 Hz steps
++** (% style="color: rgb(0,0,0);" %)click arrow up 10x, "Set", arrow up 10x, "Set", .....
++* (% style="color: rgb(0,0,0);" %)//usually 133 Hz, results in exposure time of 3.7 ms//
++{{/layout-cell}}
++{{/layout-section}}
++
++{{layout-section ac:type="single"}}
++{{layout-cell}}
++=== {{id name="14.SerialCrystallography:CFELTapeDrive-14.8Datacollection"/}}**14.8 Data collection** ===
++
  Once the hutch is interlocked, set remote control to the TapeDrive laptop by opening a terminal and executing the following command:
--                                        xfreerdp +clipboard /size:1920x1080 /u:Cfelusr /v:cfeld-pcx22611
--                                        password: //written on control laptop (changes every 6 months)//
++(% class="code" %)
++(((
++                      xfreerdp +clipboard /size:1920x1080 /u:Cfelusr /v:cfeld-pcx22611
++                      password: written on control laptop (changes every 6 months)
++)))
                                             //>>usually the terminal is open, just repeat previous command with arrow up, enter and type in the password//
  \\
++Click "Start" icon in kamzik.
++
++[[image:attach:kamzik_run-tile.jpg||height="400"]]
++
++----
++{{/layout-cell}}
++{{/layout-section}}
++
++{{layout-section ac:type="two_equal"}}
++{{layout-cell}}
  **Check list:**
++(% style="color: rgb(255,0,0);" %)//always after entering the hutch!//
++
  * Open BS1  (//CrystalControl)//
  * Put collimator in (//CrystalControl)//
  * Check beamstop position = 27 000 (//Atk panel p11/motor/eh.3.09)//
@@ -242,44 +242,33 @@
  \\
--**Start run in kamzik
--**
++**Set run parameters and go 🏃💥**
--Click "Start" icon in kamzik.
++1. Set your desired No. of frames
++1. Match exposure time with chopper setting
++1. Check trigger setting and match to chopper setting
++1. Set detector distance to 200.0 mm, confirm with //enter// and click "<Call>" button next to it.
++1. To start the run, click "<Call>" next to //exposure time//
--[[image:attach:kamzik_run-tile.jpg||height="400"]]
++\\
------
--{{/layout-cell}}
--{{/layout-section}}
++(% style="color: rgb(153,51,102);" %)**//Current bug~://**
--{{layout-section ac:type="two_equal"}}
--{{layout-cell}}
--(% class="task-list" %)
--(((
--{{task reference="/Tasks/Task_16" status="InProgress"}}
--Set your desired No. of frames
--{{/task}}
++(% style="color: rgb(0,0,0);" %)You need to "Stop" run in kamzik manually after all images have been acquired. This moves the shield up and closes the fast shutter. Afterwards you can start a new run by clicking "<Call>".
--{{task reference="/Tasks/Task_17" status="InProgress"}}
--Match exposure time with chopper setting
--{{/task}}
--{{task reference="/Tasks/Task_18" status="InProgress"}}
--Check trigger setting and match to chopper setting
--{{/task}}
++(% style="color: rgb(0,0,0);" %)Check progress in terminal with:
--{{task reference="/Tasks/Task_19" status="InProgress"}}
--Set detector distance to 200.0 mm, confirm with //enter// and click "<Call>" button next to it.
--{{/task}}
--
--{{task reference="/Tasks/Task_20" status="InProgress"}}
--To start the run, click "<Call>" next to //exposure time//
--{{/task}}
++(% class="code" %)
++(((
++      cd /gpfs/current/raw/scan_frames
++      watch "ls -lrt <run number>/ | tail"
++\\\\\\\\
  )))
  {{/layout-cell}}
  {{layout-cell}}
++(% class="wrapped relative-table" style="width: 100.0%;" %)
  |=(((
  Parameter
  )))|=(((
@@ -337,7 +337,9 @@
  )))|(% colspan="1" %)(((
  read out of diode
  )))|(% colspan="1" %)(((
--**~~ 0   !!! higher values indicate missaligned beam stop!!!**
++**~~ 0   !!! higher values indicate missaligned beam stop!!!
++Call local contact
++**
  )))
  {{/layout-cell}}
  {{/layout-section}}
@@ -344,16 +344,35 @@
  {{layout-section ac:type="single"}}
  {{layout-cell}}
--=== {{id name="14.SerialCrystallography:CFELTapeDrive-14.8Troubleshooting"/}}14.8 Troubleshooting ===
++----
++=== {{id name="14.SerialCrystallography:CFELTapeDrive-14.9Troubleshooting"/}}14.9 Troubleshooting ===
++
  * (((
  ==== {{id name="14.SerialCrystallography:CFELTapeDrive-Tapestopped"/}}Tape stopped ====
++
++* Tape roll empty?
++* motor connected (icon green)?
  )))
++
++\\
++
  * (((
  ==== {{id name="14.SerialCrystallography:CFELTapeDrive-Nozzlemotorsarenotresponding"/}}Nozzle motors are not responding ====
++
++* displayed in green=connected?
++* nozzle holder colliding somewhere?
++* motor limits reached? → position displayed in red
  )))
++
++\\
++
  * (((
  ==== {{id name="14.SerialCrystallography:CFELTapeDrive-Sampleflowisnotrespondingtohigherpressure"/}}Sample flow is not responding to higher pressure ====
++
++* channel turned on?
++* Sample empty?
++* Nozzle or lines clogged? → flush with water, change nozzle
  )))
  {{/layout-cell}}
  {{/layout-section}}

Confluence.Code.ConfluencePageClass[0]

Id

@@ -1,1 +1,1 @@
--236824566
++236824590

URL

@@ -1,1 +1,1 @@
--https://confluence.desy.de/spaces/11/pages/236824566/14. Serial Crystallography: CFEL TapeDrive
++https://confluence.desy.de/spaces/11/pages/236824590/14. Serial Crystallography: CFEL TapeDrive

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