Changes for page CFEL TapeDrive: Serial Crystallography
Last modified by chatzies on 2025-11-27 11:35
Summary
-
Page properties (1 modified, 0 added, 0 removed)
-
Objects (1 modified, 0 added, 0 removed)
Details
- Page properties
-
- Content
-
... ... @@ -218,21 +218,76 @@ 218 218 219 219 === {{id name="14.SerialCrystallography:CFELTapeDrive-14.6Nozzleexchange"/}}**14.6 Nozzle exchange** === 220 220 221 - \\221 +=== {{id name="14.SerialCrystallography:CFELTapeDrive-14.7Chopper"/}}**14.7 Chopper** === 222 222 223 - === {{id name="14.SerialCrystallography:CFELTapeDrive-14.7Datacollection"/}}**14.7Data collection** ===223 +start chopper gui from terminal: 224 224 225 +(% class="code" %) 226 +((( 227 + cd /gpfs/local/shared/ChopperControl 228 +))) 229 + 230 +(% class="code" %) 231 +((( 232 + python chopperControl.py 233 +))) 234 + 235 +---- 236 +{{/layout-cell}} 237 +{{/layout-section}} 238 + 239 +{{layout-section ac:type="two_equal"}} 240 +{{layout-cell}} 241 + [[image:attach:20211212_233140.jpg||height="250"]] 242 +{{/layout-cell}} 243 + 244 +{{layout-cell}} 245 +**Chopper → no Chopper** 246 + 247 +* decrease frequency by max. 10 Hz steps\\ 248 +** click arrow down 10x, "Set", arrow down 10x, "Set", .... 249 +* at frequency = 10 Hz, click "Stop" 250 +* set "Hole" to <none> (% style="color: rgb(255,0,0);" %)//Takes some minutes// 251 + 252 +(% style="color: rgb(0,0,0);" %)**no Chopper → Chopper** 253 + 254 +* (% style="color: rgb(0,0,0);" %)set "Hole" to <Inner hole (largest)> (% style="color: rgb(255,0,0);" %)//Takes some minutes// 255 +* (% style="color: rgb(0,0,0);" %)increase frequency by max. 10 Hz steps 256 +** (% style="color: rgb(0,0,0);" %)click arrow up 10x, "Set", arrow up 10x, "Set", ..... 257 +* (% style="color: rgb(0,0,0);" %)//usually 133 Hz, results in exposure time of 3.7 ms// 258 +{{/layout-cell}} 259 +{{/layout-section}} 260 + 261 +{{layout-section ac:type="single"}} 262 +{{layout-cell}} 263 +=== {{id name="14.SerialCrystallography:CFELTapeDrive-14.8Datacollection"/}}**14.8 Data collection** === 264 + 225 225 Once the hutch is interlocked, set remote control to the TapeDrive laptop by opening a terminal and executing the following command: 226 226 227 - xfreerdp +clipboard /size:1920x1080 /u:Cfelusr /v:cfeld-pcx22611 228 - password: //written on control laptop (changes every 6 months)// 267 +(% class="code" %) 268 +((( 269 + xfreerdp +clipboard /size:1920x1080 /u:Cfelusr /v:cfeld-pcx22611 270 + password: written on control laptop (changes every 6 months) 271 +))) 229 229 230 230 //>>usually the terminal is open, just repeat previous command with arrow up, enter and type in the password// 231 231 232 232 \\ 233 233 277 +Click "Start" icon in kamzik. 278 + 279 +[[image:attach:kamzik_run-tile.jpg||height="400"]] 280 + 281 +---- 282 +{{/layout-cell}} 283 +{{/layout-section}} 284 + 285 +{{layout-section ac:type="two_equal"}} 286 +{{layout-cell}} 234 234 **Check list:** 235 235 289 +(% style="color: rgb(255,0,0);" %)//always after entering the hutch!// 290 + 236 236 * Open BS1 (//CrystalControl)// 237 237 * Put collimator in (//CrystalControl)// 238 238 * Check beamstop position = 27 000 (//Atk panel p11/motor/eh.3.09)// ... ... @@ -242,52 +242,33 @@ 242 242 243 243 \\ 244 244 245 -**Start run in kamzik 246 -** 300 +**Set run parameters and go 🏃💥** 247 247 248 -Click "Start" icon in kamzik. 302 +1. Set your desired No. of frames 303 +1. Match exposure time with chopper setting 304 +1. Check trigger setting and match to chopper setting 305 +1. Set detector distance to 200.0 mm, confirm with //enter// and click "<Call>" button next to it. 306 +1. To start the run, click "<Call>" next to //exposure time// 249 249 250 -[[image:attach:kamzik_run-tile.jpg||height="400"]] 251 - 252 ----- 253 -{{/layout-cell}} 254 -{{/layout-section}} 255 - 256 -{{layout-section ac:type="two_equal"}} 257 -{{layout-cell}} 258 258 \\ 259 259 260 -(% class="task-list" %) 261 -((( 262 -{{task reference="/Tasks/Task_16" status="InProgress"}} 263 -(% class="task-list" %) 264 -((( 265 -{{task reference="/Tasks/Task_22" status="InProgress"}} 266 -Set your desired No. of frames 267 -{{/task}} 310 +(% style="color: rgb(153,51,102);" %)**//Current bug~://** 268 268 269 -{{task reference="/Tasks/Task_17" status="InProgress"}} 270 -Match exposure time with chopper setting 271 -{{/task}} 312 +(% style="color: rgb(0,0,0);" %)You need to "Stop" run in kamzik manually after all images have been acquired. This moves the shield up and closes the fast shutter. Afterwards you can start a new run by clicking "<Call>". 272 272 273 -{{task reference="/Tasks/Task_18" status="InProgress"}} 274 -Check trigger setting and match to chopper setting 275 -{{/task}} 276 276 277 -{{task reference="/Tasks/Task_19" status="InProgress"}} 278 -Set detector distance to 200.0 mm, confirm with //enter// and click "<Call>" button next to it. 279 -{{/task}} 315 +(% style="color: rgb(0,0,0);" %)Check progress in terminal with: 280 280 281 -{{task reference="/Tasks/Task_20" status="InProgress"}} 282 -To start the run, click "<Call>" next to //exposure time// 283 -{{/task}} 317 +(% class="code" %) 318 +((( 319 + cd /gpfs/current/raw/scan_frames 320 + watch "ls -lrt <run number>/ | tail" 321 +\\\\\\\\ 284 284 ))) 285 -{{/task}} 286 -))) 287 287 {{/layout-cell}} 288 288 289 289 {{layout-cell}} 290 -(% class="wrapped" %) 326 +(% class="wrapped relative-table" style="width: 100.0%;" %) 291 291 |=((( 292 292 Parameter 293 293 )))|=((( ... ... @@ -345,7 +345,9 @@ 345 345 )))|(% colspan="1" %)((( 346 346 read out of diode 347 347 )))|(% colspan="1" %)((( 348 -**~~ 0 !!! higher values indicate missaligned beam stop!!!** 384 +**~~ 0 !!! higher values indicate missaligned beam stop!!! 385 +Call local contact 386 +** 349 349 ))) 350 350 {{/layout-cell}} 351 351 {{/layout-section}} ... ... @@ -352,16 +352,35 @@ 352 352 353 353 {{layout-section ac:type="single"}} 354 354 {{layout-cell}} 355 - === {{id name="14.SerialCrystallography:CFELTapeDrive-14.8Troubleshooting"/}}14.8 Troubleshooting ===393 +---- 356 356 395 +=== {{id name="14.SerialCrystallography:CFELTapeDrive-14.9Troubleshooting"/}}14.9 Troubleshooting === 396 + 357 357 * ((( 358 358 ==== {{id name="14.SerialCrystallography:CFELTapeDrive-Tapestopped"/}}Tape stopped ==== 399 + 400 +* Tape roll empty? 401 +* motor connected (icon green)? 359 359 ))) 403 + 404 +\\ 405 + 360 360 * ((( 361 361 ==== {{id name="14.SerialCrystallography:CFELTapeDrive-Nozzlemotorsarenotresponding"/}}Nozzle motors are not responding ==== 408 + 409 +* displayed in green=connected? 410 +* nozzle holder colliding somewhere? 411 +* motor limits reached? → position displayed in red 362 362 ))) 413 + 414 +\\ 415 + 363 363 * ((( 364 364 ==== {{id name="14.SerialCrystallography:CFELTapeDrive-Sampleflowisnotrespondingtohigherpressure"/}}Sample flow is not responding to higher pressure ==== 418 + 419 +* channel turned on? 420 +* Sample empty? 421 +* Nozzle or lines clogged? → flush with water, change nozzle 365 365 ))) 366 366 {{/layout-cell}} 367 367 {{/layout-section}}
- Confluence.Code.ConfluencePageClass[0]
-
- Id
-
... ... @@ -1,1 +1,1 @@ 1 -2368245 671 +236824589 - URL
-
... ... @@ -1,1 +1,1 @@ 1 -https://confluence.desy.de/spaces/11/pages/2368245 67/14. Serial Crystallography: CFEL TapeDrive1 +https://confluence.desy.de/spaces/11/pages/236824589/14. Serial Crystallography: CFEL TapeDrive