Changes for page CFEL TapeDrive: Serial Crystallography
Last modified by chatzies on 2025-11-27 11:35
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... ... @@ -218,8 +218,10 @@ 218 218 {{/layout-cell}} 219 219 {{/layout-section}} 220 220 221 -{{layout-section ac:type=" two_equal"}}221 +{{layout-section ac:type="single"}} 222 222 {{layout-cell}} 223 +---- 224 + 223 223 == {{id name="14.SerialCrystallography:CFELTapeDrive-14.6Datacollection"/}}**14.6 Data collection** == 224 224 225 225 Once the hutch is interlocked, set remote control to the TapeDrive laptop by opening a terminal and executing the following command: ... ... @@ -230,43 +230,33 @@ 230 230 password: written on control laptop (changes every 6 months) 231 231 ))) 232 232 233 - //>>usually the terminal is open, just repeat previous command with arrow up, enter and type in the password// 235 + //>>usually the terminal is open, just repeat previous command with arrow up, enter and type in the password// 234 234 235 235 \\ 236 236 237 - **Checklist:**239 +Click "Start" icon in kamzik. 238 238 239 - (% style="color:rgb(255,0,0);" %)//alwaysafterenteringthehutch!//241 +[[image:attach:kamzik_run-tile.jpg||height="400"]] 240 240 241 -(% style="color: rgb(0,0,0);" %)Click "Safety" icon in kamzik. 242 - 243 -* Put collimator in 244 -** Click "<Call>" next to //collimator_in// 245 - 246 -\\ 247 - 248 -* Open beam shutter BS1 in //CrystalControl// 243 +---- 249 249 {{/layout-cell}} 250 - 251 -{{layout-cell}} 252 -[[image:attach:kamzik_safety.PNG||height="400"]] 253 -{{/layout-cell}} 254 254 {{/layout-section}} 255 255 256 -{{layout-section ac:type=" single"}}247 +{{layout-section ac:type="two_equal"}} 257 257 {{layout-cell}} 258 - ----249 +**Check list:** 259 259 260 - Click"Start/Run"iconinkamzik.251 +(% style="color: rgb(255,0,0);" %)//always after entering the hutch!// 261 261 262 -[[image:attach:kamzik_run-tile.jpg||height="400"]] 253 +* Open BS1 (//CrystalControl)// 254 +* Put collimator in (//CrystalControl)// 255 +* Check beamstop position = 27 000 (//Atk panel p11/motor/eh.3.09)// 256 +* Open fast shutter (//CrystalControl)// 257 +* Check diode voltage ~~ 0.0 (//kamzik Run/Diode voltage)// 258 +* Close fast shutter (//CrystalControl)// 263 263 264 ----- 265 -{{/layout-cell}} 266 -{{/layout-section}} 260 +\\ 267 267 268 -{{layout-section ac:type="two_equal"}} 269 -{{layout-cell}} 270 270 **Set run parameters and go 🏃💥** 271 271 272 272 1. Set your desired No. of frames ... ... @@ -277,17 +277,19 @@ 277 277 278 278 \\ 279 279 280 - \\272 +(% style="color: rgb(153,51,102);" %)**//Current bug~://** 281 281 282 - **After datacollection/Before enteringthe exp.hutch:**274 +(% style="color: rgb(0,0,0);" %)You need to "Stop" run in kamzik manually after all images have been acquired. This moves the shield up and closes the fast shutter. Afterwards you can start a new run by clicking "<Call>". 283 283 284 -1. Go to "Safety" in kamzik. 285 -1. Click "<Call>" next to //prepare_to_open_hutch. //This will automatically: 286 -11. Drive the collimator out 287 -11. Drive the detector back to 1500 mm 288 -1. Close beam shutter BS1 and break door interlock in //P11 XRayFeed //(monitor top left). 289 289 290 -[[image:attach:Screenshot from 2022-04-04 19-36-29.png||height="400"]] 277 +(% style="color: rgb(0,0,0);" %)Check progress in terminal with: 278 + 279 +(% class="code" %) 280 +((( 281 + cd /gpfs/current/raw/scan_frames 282 + watch "ls -lrt <run number>/ | tail" 283 +\\\\\\\\ 284 +))) 291 291 {{/layout-cell}} 292 292 293 293 {{layout-cell}} ... ... @@ -388,41 +388,16 @@ 388 388 * Sample empty? 389 389 * Nozzle or lines clogged? → flush with water, change nozzle 390 390 ))) 391 - 392 -\\ 393 - 394 394 * ((( 395 395 ==== {{id name="14.SerialCrystallography:CFELTapeDrive-Simplonfilewriter/eigerstreamissues"/}}Simplon filewriter/eiger stream issues ==== 396 396 397 397 * First, restart kamzik (server+client) and see if this solves the issue 398 398 * If not, restart the Simplon server (in Astor → haspp11exp03, right click on Simplon/EH.1 and restart) 399 -* ((( 400 -If nothing works, kill the Simplon process and then start the server again:* ((( 401 -(% class="code" %) 402 -((( 403 -ssh haspp11exp03 390 +* If nothing works, kill the Simplon process and then start the server again: 391 +** ssh haspp11exp03 392 +** ps -ef | grep Simplon 393 +** kill -9 simplon_process_id 404 404 ))) 405 -))) 406 -* ((( 407 -(% class="code" %) 408 -((( 409 -ps -ef | grep Simplon 410 -))) 411 -))) 412 -* ((( 413 -(% class="code" %) 414 -((( 415 -kill -9 simplon_process_id 416 -))) 417 -))) 418 -))) 419 -))) 420 420 {{/layout-cell}} 421 421 {{/layout-section}} 422 - 423 -{{layout-section ac:type="single"}} 424 -{{layout-cell}} 425 -\\ 426 -{{/layout-cell}} 427 -{{/layout-section}} 428 428 {{/layout}}
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... ... @@ -1,1 +1,1 @@ 1 -2501786 411 +250178622 - URL
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... ... @@ -1,1 +1,1 @@ 1 -https://confluence.desy.de/spaces/11/pages/2501786 41/14. Serial Crystallography: CFEL TapeDrive1 +https://confluence.desy.de/spaces/11/pages/250178622/14. Serial Crystallography: CFEL TapeDrive