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Last modified by chatzies on 2025-11-27 11:35
From version 65.1
edited by ahenkel
on 2022-05-05 19:37
Change comment: There is no comment for this version
To version 76.1
edited by ahenkel
on 2022-11-02 16:25
Change comment: There is no comment for this version

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... ... @@ -214,7 +214,7 @@
214 214  * (% style="color: rgb(0,0,0);" %)set "Hole" to <Inner hole (largest)> (% style="color: rgb(255,0,0);" %)//Takes some minutes//
215 215  * (% style="color: rgb(0,0,0);" %)increase frequency by max. 10 Hz steps
216 216  ** (% style="color: rgb(0,0,0);" %)click arrow up 10x, "Set", arrow up 10x, "Set", .....
217 -* (% style="color: rgb(0,0,0);" %)//usually 133 Hz, results in exposure time of 3.7 ms (technical exposure will always be 7.7 ms, since max. frame rate is 133 Hz
217 +* (% style="color: rgb(0,0,0);" %)//usually 130 Hz, results in exposure time of 3.7 ms (technical exposure will always be 7.7 ms, since max. frame rate is 130 Hz
218 218  //
219 219  {{/layout-cell}}
220 220  {{/layout-section}}
... ... @@ -221,6 +221,8 @@
221 221  
222 222  {{layout-section ac:type="single"}}
223 223  {{layout-cell}}
224 +----
225 +
224 224  == {{id name="14.SerialCrystallography:CFELTapeDrive-14.6Datacollection"/}}**14.6 Data collection** ==
225 225  
226 226  Once the hutch is interlocked, set remote control to the TapeDrive laptop by opening a terminal and executing the following command:
... ... @@ -227,7 +227,7 @@
227 227  
228 228  (% class="code" %)
229 229  (((
230 - xfreerdp +clipboard /size:1920x1080 /u:Cfelusr /v:cfeld-pcx22611
232 + xfreerdp +clipboard /size:1920x1080 /u:cfelusr /v:cfeld-tapetop
231 231   password: written on control laptop (changes every 6 months)
232 232  )))
233 233  
... ... @@ -243,60 +243,41 @@
243 243  
244 244  (% style="color: rgb(255,0,0);" %)//always after entering the hutch!//
245 245  
246 -(% style="color: rgb(0,0,0);" %)Click "Safety" icon in kamzik.
248 +(% style="color: rgb(0,0,0);" %)Click "Run" icon in kamzik.
247 247  
248 -* Put collimator in
249 -** Click "<Call>" next to //collimator_in//
250 +* Put detector distance 200 in //prepare_for_measurement (      )
251 +//
252 +* Click "<Call>" next to //prepare_for_measurement
253 +//This will:\\
254 +** drive the collimator in //IN// position
255 +** drive detector to 200 mm
250 250  
251 251  \\
252 252  
253 253  * Open beam shutter BS1 in //CrystalControl //or// P11 XRayFeed //
254 -{{/layout-cell}}
255 255  
256 -{{layout-cell}}
257 -[[image:attach:kamzik_safety.PNG||height="400"]]
258 -{{/layout-cell}}
259 -{{/layout-section}}
261 +\\
260 260  
261 -{{layout-section ac:type="single"}}
262 -{{layout-cell}}
263 -----
263 +//**Set run parameters and go 🏃💥**//
264 264  
265 -Click "Start/Run" icon in kamzik.
266 -
267 -[[image:attach:kamzik_run-tile.jpg||height="400"]]
268 -
269 -----
270 -{{/layout-cell}}
271 -{{/layout-section}}
272 -
273 -{{layout-section ac:type="two_equal"}}
274 -{{layout-cell}}
275 -**Set run parameters and go 🏃💥**
276 -
277 277  1. Set your desired No. of frames
278 -1. Match exposure time with chopper setting
266 +1. Enter the protein ID of your crystal sample
267 +1. Match exposure time with chopper setting or set desired exposure time
279 279  1. Check trigger setting and match to chopper setting
280 -1. Set detector distance to 200.0 mm, confirm with //enter// and click "<Call>" button next to it.
281 -1. To start the run, click "<Call>" next to //exposure time//
269 +no chopper → external triffer //off
270 +// chopper → external trigger// on
271 +//
272 +1. To start the run, click "<Call>" next to //start_run (exposure    )//
273 +{{/layout-cell}}
282 282  
283 -\\
284 -
285 -\\
286 -
287 -**After data collection/Before entering the exp. hutch:**
288 -
289 -1. Go to "Safety" in kamzik.
290 -1. Click "<Call>" next to //prepare_to_open_hutch. //This will automatically:
291 -11. Drive the collimator out
292 -11. Drive the detector back to 1500 mm
293 -1. Close beam shutter BS1 and break door interlock in //P11 XRayFeed //(monitor top left).
294 -
295 -[[image:attach:Screenshot from 2022-04-04 19-36-29.png||height="400"]]
275 +{{layout-cell}}
276 +[[image:attach:Kamzik_run(2).PNG]]
296 296  {{/layout-cell}}
278 +{{/layout-section}}
297 297  
280 +{{layout-section ac:type="single"}}
298 298  {{layout-cell}}
299 -(% class="wrapped relative-table" style="width: 100.0%;" %)
282 +(% class="relative-table wrapped" style="width: 55.9569%;" %)
300 300  |=(((
301 301  Parameter
302 302  )))|=(((
... ... @@ -307,7 +307,7 @@
307 307  |(((
308 308  Images number
309 309  )))|(((
310 -Set number of frames you want to collect
293 +number of frames you want to collect
311 311  )))|(% colspan="1" %)(((
312 312  usually 100k - 200k, but adjust according to hitrate
313 313  
... ... @@ -320,10 +320,7 @@
320 320  
321 321  \\
322 322  )))|(% colspan="1" %)(((
323 -chopper at 133 Hz → 7.7 ms (opening time will be 3.7)
324 -
325 -chopper at 66 Hz   → 7.7 ms
326 -
306 +with chopper         → opening time displayed in chopper GUI
327 327  no chopper            → 7.7 ms
328 328  
329 329  ----
... ... @@ -343,15 +343,45 @@
343 343  \\
344 344  )))
345 345  |(% colspan="1" %)(((
346 -move_detector (distance)
326 +protein ID
347 347  )))|(% colspan="1" %)(((
348 -Set detector distance
328 +protein ID of crystal sample (see AMARCORD)
349 349  )))|(% colspan="1" %)(((
350 -200.0 mm   (% style="color: rgb(255,0,0);" %)confirm with //enter//, click "<Call>"
330 +\\
351 351  )))
332 +
333 +----
352 352  {{/layout-cell}}
353 353  {{/layout-section}}
354 354  
337 +{{layout-section ac:type="two_equal"}}
338 +{{layout-cell}}
339 +**After data collection/Before entering the exp. hutch:**
340 +
341 +1. Go to "Safety" in kamzik.
342 +1. Click "<Call>" next to //prepare_to_open_hutch. //This will automatically:
343 +11. Drive the collimator out
344 +11. Drive the detector back to 1500 mm
345 +1. Close beam shutter BS1 and break door interlock in //P11 XRayFeed //(monitor top left).
346 +
347 +[[image:attach:Screenshot from 2022-04-04 19-36-29.png]]
348 +{{/layout-cell}}
349 +
350 +{{layout-cell}}
351 +\\
352 +
353 +\\
354 +
355 +\\
356 +
357 +\\
358 +
359 +\\
360 +
361 +[[image:attach:safety_kamzik.PNG]]
362 +{{/layout-cell}}
363 +{{/layout-section}}
364 +
355 355  {{layout-section ac:type="single"}}
356 356  {{layout-cell}}
357 357  ----
... ... @@ -412,6 +412,7 @@
412 412  )))
413 413  )))
414 414  )))
425 +* After the Simplon server is back up, close all kamzik windows and restart (first server, then client)
415 415  )))
416 416  {{/layout-cell}}
417 417  {{/layout-section}}
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Id
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1 -254728507
1 +235031805
URL
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1 -https://confluence.desy.de/spaces/11/pages/254728507/14. Serial Crystallography: CFEL TapeDrive
1 +https://confluence.desy.de/spaces/11/pages/235031805/14. Serial Crystallography: CFEL TapeDrive