Changes for page CFEL TapeDrive: Serial Crystallography
Last modified by chatzies on 2025-11-27 11:35
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... ... @@ -1,1 +1,1 @@ 1 - 10. Serial Crystallography: CFEL TapeDrive1 +08. Serial Crystallography: CFEL TapeDrive - Content
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... ... @@ -4,12 +4,12 @@ 4 4 [[image:attach:TapeDrive_beschriftet-tile.jpg||height="400"]] 5 5 6 6 7 -{{toc minLevel="2"/}}7 +{{toc/}} 8 8 9 9 10 10 ---- 11 11 12 -= ={{id name="14.SerialCrystallography:CFELTapeDrive-14.1Samplecharacteristicsandpreparation"/}}**14.1 Sample characteristics and preparation**==12 += {{id name="14.SerialCrystallography:CFELTapeDrive-14.1Samplecharacteristicsandpreparation"/}}8.1. Sample characteristics and preparation = 13 13 14 14 suspension of microcrystals, **at least** 200 µL with 20% crystal density (more is always better), size range: 2-30 µm, **tip:** bring some mother liquor for washing, filtering, diluting etc. 15 15 ... ... @@ -22,9 +22,9 @@ 22 22 23 23 ---- 24 24 25 -= ={{id name="14.SerialCrystallography:CFELTapeDrive-14.2ConnectingsampletoElveFlow,sampleexchange"/}}**14.2 Connecting sample to ElveFlow, sample exchange**==25 += {{id name="14.SerialCrystallography:CFELTapeDrive-14.2ConnectingsampletoElveFlow,sampleexchange"/}}8.2. Connecting sample to ElveFlow, sample exchange = 26 26 27 -* 27 +* 28 28 ** == 29 29 30 30 After filtration, screw the ElveFlow connector to your Eppendorf or Falcon tube. Make sure that the yellow-ish line goes to the bottom of your tube. You can adjust the length by unscrewing the blue fitting on top and pushing/pulling the yellow-ish line. **Don't forget to tigthen the blue fitting afterwards!** ... ... @@ -44,9 +44,9 @@ 44 44 45 45 ---- 46 46 47 -= ={{id name="14.SerialCrystallography:CFELTapeDrive-14.3TapeDriveoperation"/}}**14.3 TapeDrive operation**==47 += {{id name="14.SerialCrystallography:CFELTapeDrive-14.3TapeDriveoperation"/}}8.3. TapeDrive operation = 48 48 49 -* 49 +* 50 50 ** == 51 51 52 52 The TapeDrive is controlled through kamzik. To open kamzik, start the server. A terminal will open and shortly after a small window. ... ... @@ -55,7 +55,7 @@ 55 55 Click 'Devices' in the **client session** to open the control window. 56 56 [[image:attach:screen.PNG||height="250"]][[image:attach:server client.PNG||height="250"]] 57 57 58 -== =={{id name="14.SerialCrystallography:CFELTapeDrive-Tape"/}}**Tape**====58 +== {{id name="14.SerialCrystallography:CFELTapeDrive-Tape"/}}Tape == 59 59 60 60 * Click the 'main tape' icon 61 61 * Change the velocity by typing anything from **0.3-3.0 mm/s** ... ... @@ -64,7 +64,7 @@ 64 64 65 65 * [[image:attach:kamzik_tape.PNG||height="400"]] 66 66 67 -== =={{id name="14.SerialCrystallography:CFELTapeDrive-Samplenozzle"/}}**Sample nozzle**====67 +== {{id name="14.SerialCrystallography:CFELTapeDrive-Samplenozzle"/}}Sample nozzle == 68 68 69 69 * Click on the 'nozzle' icon. 70 70 * ((( ... ... @@ -116,22 +116,20 @@ 116 116 be careful with -z, tape could be pushed out of focus 117 117 ))) 118 118 119 - 120 120 121 121 ))) 122 122 * [[image:attach:kamzik_nozzle.PNG||height="400"]] 123 123 124 -== =={{id name="14.SerialCrystallography:CFELTapeDrive-Temperaturecontrol/Chiller"/}}**Temperature control/Chiller**====123 +== {{id name="14.SerialCrystallography:CFELTapeDrive-Temperaturecontrol/Chiller"/}}Temperature control/Chiller == 125 125 126 126 * The chiller circulates fluid through the gas nozzle. 127 127 127 +== {{id name="14.SerialCrystallography:CFELTapeDrive-Gasnozzle"/}}Gas nozzle == 128 128 129 -==== {{id name="14.SerialCrystallography:CFELTapeDrive-Gasnozzle"/}}**Gas nozzle** ==== 130 130 130 +== {{id name="14.SerialCrystallography:CFELTapeDrive-IRcamera"/}}IR camera == 131 131 132 -==== {{id name="14.SerialCrystallography:CFELTapeDrive-IRcamera"/}}**IR camera** ==== 133 133 134 - 135 135 Once the hutch is interlocked, set remote control to the TapeDrive laptop by opening a terminal and executing the following command: 136 136 137 137 xfreerdp +clipboard /size:1920x1080 /u:Cfelusr /v:cfeld-pcx22611 ... ... @@ -141,7 +141,7 @@ 141 141 142 142 ---- 143 143 144 -= ={{id name="14.SerialCrystallography:CFELTapeDrive-14.4Taperollexchange"/}}**14.4 Tape roll exchange**==142 += {{id name="14.SerialCrystallography:CFELTapeDrive-14.4Taperollexchange"/}}8.4. Tape roll exchange = 145 145 146 146 The tape stops automatically at 98% used length, if you need to change the rolls for orther reasons, stop the tape (velocity = 0.0 mm/s). 147 147 ... ... @@ -169,7 +169,7 @@ 169 169 {{layout-cell}} 170 170 ---- 171 171 172 -= ={{id name="14.SerialCrystallography:CFELTapeDrive-14.5Chopper"/}}**14.5 Chopper**==170 += {{id name="14.SerialCrystallography:CFELTapeDrive-14.5Chopper"/}}8.5. Chopper = 173 173 174 174 start chopper gui from terminal: 175 175 ... ... @@ -212,7 +212,7 @@ 212 212 {{layout-cell}} 213 213 ---- 214 214 215 -= ={{id name="14.SerialCrystallography:CFELTapeDrive-14.6Datacollection"/}}**14.6 Data collection**==213 += {{id name="14.SerialCrystallography:CFELTapeDrive-14.6Datacollection"/}}8.6. Data collection = 216 216 217 217 Once the hutch is interlocked, set remote control to the TapeDrive laptop by opening a terminal and executing the following command: 218 218 ... ... @@ -242,10 +242,8 @@ 242 242 ** drive the collimator in //IN// position 243 243 ** drive detector to 200 mm 244 244 245 - 246 246 * Open beam shutter BS1 in //CrystalControl //or// P11 XRayFeed // 247 247 248 - 249 249 //**Set run parameters and go 🏃💥**// 250 250 251 251 1. Set your desired No. of frames ... ... @@ -347,18 +347,17 @@ 347 347 {{layout-cell}} 348 348 ---- 349 349 350 -= ={{id name="14.SerialCrystallography:CFELTapeDrive-14.7Troubleshooting"/}}**14.7 Troubleshooting**==346 += {{id name="14.SerialCrystallography:CFELTapeDrive-14.7Troubleshooting"/}}8.7. Troubleshooting = 351 351 352 352 * ((( 353 -== =={{id name="14.SerialCrystallography:CFELTapeDrive-Tapestopped"/}}Tape stopped ====349 +== {{id name="14.SerialCrystallography:CFELTapeDrive-Tapestopped"/}}Tape stopped == 354 354 355 355 * Tape roll empty? 356 356 * motor connected (icon green)? 357 357 ))) 358 358 359 - 360 360 * ((( 361 -== =={{id name="14.SerialCrystallography:CFELTapeDrive-Nozzlemotorsarenotresponding"/}}Nozzle motors are not responding ====356 +== {{id name="14.SerialCrystallography:CFELTapeDrive-Nozzlemotorsarenotresponding"/}}Nozzle motors are not responding == 362 362 363 363 * displayed in green=connected? 364 364 * nozzle holder colliding somewhere? ... ... @@ -365,9 +365,8 @@ 365 365 * motor limits reached? → position displayed in red 366 366 ))) 367 367 368 - 369 369 * ((( 370 -== =={{id name="14.SerialCrystallography:CFELTapeDrive-Sampleflowisnotrespondingtohigherpressure"/}}Sample flow is not responding to higher pressure ====364 +== {{id name="14.SerialCrystallography:CFELTapeDrive-Sampleflowisnotrespondingtohigherpressure"/}}Sample flow is not responding to higher pressure == 371 371 372 372 * channel turned on? 373 373 * Sample empty? ... ... @@ -374,9 +374,8 @@ 374 374 * Nozzle or lines clogged? → flush with water, change nozzle 375 375 ))) 376 376 377 - 378 378 * ((( 379 -== =={{id name="14.SerialCrystallography:CFELTapeDrive-Simplonfilewriter/eigerstreamissues"/}}Simplon filewriter/eiger stream issues ====372 +== {{id name="14.SerialCrystallography:CFELTapeDrive-Simplonfilewriter/eigerstreamissues"/}}Simplon filewriter/eiger stream issues == 380 380 381 381 * First, restart kamzik (server+client) and see if this solves the issue 382 382 * If not, restart the Simplon server (in Astor → haspp11exp03, right click on Simplon/EH.1 and restart)
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