Changes for page Extended ISPyB (EXI)

Last modified by hakanj on 2025-11-24 09:34

From version 12.11
edited by tabermah
on 2024-12-09 11:46
Change comment: There is no comment for this version
To version 11.1
edited by tabermah
on 2024-12-06 15:56
Change comment: Uploaded new attachment "Proposal.png", version {1}

Summary

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Title
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1 -Extended ISPyB (EXI) (Under construction!)
1 +Extended ISPyB (EXI)
Content
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8 8  Users with a scheduled beamtime at P11 can log in to [[EXI>>https://exi.desy.de/exi/mx/#/welcome]] at any time so create a shipment.
9 9  
10 10  * Log in with your DOOR account credentials.
11 -* Select the proposal you want to work with (Fig. 1). Make sure you work with the proposal with scheduled beamtime. Sample information entered under the wrong proposal cannot be accessed during the experiment.
11 +* Select the proposal you want to work with. Make sure you work with the proposal with scheduled beamtime. Sample information entered under the wrong proposal cannot be accessed during the experiment.
12 12  * If your proposal is not listed
13 13  
14 -[[image:Proposal.png||height="263" width="600"]]
15 15  
16 -**Figure 1.**
17 17  
16 += Creating a contact at the user's institution =
18 18  
19 -= Creating a contact at the user's institution (% style="color:#e74c3c" %)(?)(%%) =
18 +The first step to set up the shipment is to assign a contact from your home laboratory. This is the person whose name will appear in the shipping labels and who will receive notifications about the dewar.
20 20  
20 +* On the top menu bar, select **Manage shipping address** from the **Shipment** drop down menu. Select **List** to show the existing contact address card list – it will open to the left of the window.
21 +* Look for your name in the list (the information is taken automatically from DOOR) and click anywhere on the card to verify that all the information is up to date and complete. If this is not the case, click on the **Edit** button, enter the correct information and **Save**.
21 21  
22 22  = Create a shipment =
23 23  
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26 26  * From the **Shipment** drop down menu, select **Shipments** and **Add new**.
27 27  * Fill in the shipment form. This information will be shown in the two ID labels generated by EXI to easily identify your dewar when it arrives and departs DESY and while it is present at the beamline. **Note:** Even if you are using your own shipping labels, or bringing the dewar to DESY yourself, it is important to attach the ID label to the dewar to avoid misidentification.
28 28  ** The **name** field entry will appear in the shipment list and the ID labels and it must be unique for the proposal. We recommend a name containing the date of the experiment.
29 -** The **session** menu allows selection between the beamtimes created in DOOR and needs to be chosen.
30 -** Select from the **From** drop down menu your name or other contact person in your home lab responsible for the shipment. Usually the **Return address** will be the “same as for shipping to the beamline” (default), but you may choose a different one.
30 +** The **session** menu allows selection between the beamtimes created in DOOR. This field is for information only and not used by the software at MAX IV ?.
31 +** Select your name (that is the default if you use “my_card_name”) or other contact person in your home lab responsible for the shipment. Usually the **Return address** will be the “same as for shipping to the beamline” (default), but you may choose a different one.
31 31  ** **Save** the entered information.
32 32  ** If you wish to review or edit the information after saving the form, select **List** under **Shipments** in the Shipment dropdown menu. That will show a list of your shipments in the left side of the window in inverse order of creation -sometimes you may need to refresh the page to show the newly created shipment. Click anywhere on the shipment card to open the shipment information.
33 33  * Set up the parcels (dewars) and sample list contained in the shipment as explained in the following section
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60 60  * Click the **Add parcel** button.
61 61  * Fill up the parcel name (must be unique within the shipment) and select the type (usually “dry shipper”). Then, click **Save**.
62 62  * Back at the shipment page, click on the **Add container** link to the right of the new parcel card.
63 -* Enter the name of the container. This must be the name engraved in the Unipuck, and it must be unique within the shipment. Then select Unipuck as the type; this is the only type of container supported at P11. When you save, an image of the Unipuck will be displayed in the parcel card.
64 +* Enter the name of the container -this must be the name engraved in the Unipuck, and it must be unique within the shipment. Then select Unipuck as the type; this is the only type of container supported at P11. When you save, an image of the Unipuck will be displayed in the parcel card.
64 64  * Click on the Unipuck and select **Edit** This will direct to the spreadsheet form where you can list the samples in the container.
65 65  ** Select the protein from the drop down menu. If it is not there, create a new sample as either from the Proteins and Crystals menu as described above or by clicking on the **Add Protein** button in the container sample list spreadsheet form.
66 -** Enter a sample name. It must be unique for the protein. The name will autofill if you select the same protein in consecutive Unipuck positions.
67 +** Enter a crystal name. It must be unique for the protein. The name will autofill if you select the same protein in consecutive Unipuck positions.
67 67  ** The crystal form is not compulsory, but will be used by the autoprocessing if provided. You can choose the space group and cell from the drop down menu. If you have not entered yet the information for the protein, select **NEW**, which will open a form to provide the values.
68 68  ** None of the other fields are used at P11.
69 69  ** After filling up the sample information, click on **Shipment** button above the spreadsheet and reply **Yes** to save the changes to the container.