Changes for page Extended ISPyB (EXI)
Last modified by hakanj on 2025-11-24 09:34
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... ... @@ -23,7 +23,7 @@ 23 23 24 24 The next steps are to generate the ID and shipping labels for your dewars, list the containers and samples in the dewars and send a notification to DESY P11 staff. Even if you plan to transport the dewars to DESY yourself, creating the shipment is useful to provide the required sample information to be used in synching to MXCuBE. 25 25 26 -* From the **Shipment** drop down menu, select **Shipments** and **Add new**. 26 +* From the **Shipment** drop down menu, select **Shipments** and **Add new **(Fig. 2). 27 27 * Fill in the shipment form. This information will be shown in the two ID labels generated by EXI to easily identify your dewar when it arrives and departs DESY and while it is present at the beamline. **Note:** Even if you are using your own shipping labels, or bringing the dewar to DESY yourself, it is important to attach the ID label to the dewar to avoid misidentification. 28 28 ** The **name** field entry will appear in the shipment list and the ID labels and it must be unique for the proposal. We recommend a name containing the date of the experiment. 29 29 ** The **session** menu allows selection between the beamtimes created in DOOR and needs to be chosen. ... ... @@ -34,10 +34,12 @@ 34 34 35 35 [[image:CreateShipment.png||height="204" width="700"]] 36 36 37 +**Figure 2.** 37 37 39 + 38 38 = Create new samples and provide a sample list = 39 39 40 -This section describes how to enter information about the parcels, containers and samples present in the shipment. Adding the parcels must be done in order to generate the shipping label for the dewars, as described 42 +This section describes how to enter information about the parcels, containers and samples present in the shipment. Adding the parcels must be done in order to generate the shipping label for the dewars, as described in the **Send shipment **section in this document. However, filling up the sample details can be done while the dewars are in transit or even when they are already at DESY. Once the Unipucks are loaded in the sample changer dewar (shipment status set to “processing”) it will not be possible to change the shipment contents any longer. 41 41 42 42 43 43 == Creating a new sample == ... ... @@ -44,7 +44,7 @@ 44 44 45 45 If you are sending crystals of a new protein, it is important that you create an entry for the protein, since you will not be able to upload or save information from an unknown sample. To create a protein follow these steps: 46 46 47 -* Click on **Proteins and Crystals** in the upper menu bar. 49 +* Click on **Proteins and Crystals** in the upper menu bar (Fig. 3). 48 48 * Select **Add new protein**. You can also display the **List** to check is the protein is already present. 49 49 * Enter the protein name and acronym and click **Save**. The name is merely descriptive and will not be used by the software. 50 50 * If you wish to enter and save the space group and unit cell, look for the protein in the list and click on the **Crystal form** tab at the right of the card. This information is not compulsory and can also be added at a later stage for each crystal in the sample information list. ... ... @@ -51,7 +51,9 @@ 51 51 52 52 [[image:CreateSample.png||height="188" width="700"]] 53 53 56 +**Figure 3.** 54 54 58 + 55 55 == Fill the sample information in a CSV file == 56 56 57 57 A practical way to enter information about the parcels, containers and samples included in the shipment is by uploading a CSV file. The upload menu is accessed by clicking the **Import from CSV** button in the shipment card. The example file below will generate a parcel called Dewar1 containing seven Unipucks fully loaded with crystals of different proteins.