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Changes for page Extended ISPyB (EXI)

Last modified by hakanj on 2025-11-24 09:34
From version 5.1
edited by tabermah
on 2024-12-06 09:06
Change comment: There is no comment for this version
To version 7.1
edited by tabermah
on 2024-12-06 09:07
Change comment: There is no comment for this version

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Title
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1 -ISPyB
1 +Extended ISPyB (EXI)
Content
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33 33  This section describes how to enter information about the parcels, containers and samples present in the shipment. Adding the parcels must be done in order to generate the shipping label for the dewars, as described  in the **Send shipment**section in this document. However, filling up the sample details can be done while the dewars are in transit or even when they are already at DESY. Once the Unipucks are loaded in the sample changer dewar (shipment status set to “processing”) it will not be possible to change the shipment contents any longer.
34 34  
35 35  
36 -Creating a new sample
36 +== Creating a new sample ==
37 37  
38 38  If you are sending crystals of a new protein, it is important that you create an entry for the protein, since you will not be able to upload or save information from an unknown sample. To create a protein follow these steps:
39 39  
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42 42  * Enter the protein name and acronym and click **Save**. The name is merely descriptive and will not be used by the software.
43 43  * If you wish to enter and save the space group and unit cell, look for the protein in the list and click on the **Crystal form** tab at the right of the card. This information is not compulsory and can also be added at a later stage for each crystal in the sample information list.
44 44  
45 +== Fill the sample information in a CSV file ==
45 45  
46 -Fill the sample information in a CSV file
47 -
48 48  A practical way to enter information about the parcels, containers and samples included in the shipment is by uploading a CSV file. The upload menu is accessed by clicking the **Import from CSV** button in the shipment card. [[This example file>>url:https://lu.box.com/s/c4bpgc9ygm03wt9jhh8lu9x0rt67gh2m]] will generate a parcel called Dewar1 containing seven Unipucks fully loaded with crystals of a single protein . The example spreadsheet also contains a diffraction plan (data collection parameters that can be used for automated experiments). It is possible as well to include more than one parcel in the same file or upload separate files for different Unipucks.
49 49  
50 50  After saving the sample list, you can edit the information by going to the shipment page, clicking on the containers and selecting **Edit**. That will display the sample list for that container. You can also make corrections to the CSV file, then delete the parcel by clicking on the “Edit” icon to the right of the parcel pane and clicking on **Remove**, and finally reload the corrected CSV again.
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54 54  Filled up parcel in the shipment page. Use the icons to the right to add extra Unipucks, edit/remove the parcel, print the shipping labels. To import a CSV file, use the link above the parcel pane.
55 55  
56 56  
57 -Fill the sample information online
56 +== Fill the sample information online ==
58 58  
59 59  * Click the **Add parcel** button.
60 60  * Fill up the parcel name (must be unique within the shipment) and select the type (usually “dry shipper”). Then, click **Save**.