Changes for page Extended ISPyB (EXI)
Last modified by hakanj on 2025-11-24 09:34
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... ... @@ -24,7 +24,7 @@ 24 24 25 25 * From the **Shipment** drop down menu, select **Shipments** and **Add new **(Fig. 2). 26 26 * Fill in the shipment form. 27 -** The **name** field entry will appear in the list of created shipments and the ID labels. Names easilylinkingtosessions(e.g. July_2025)are recommended.27 +** The **name** field entry will appear in the list of created shipments and the ID labels. Names useful for your own archiving purpose are recommended. 28 28 ** The **session** dropdown menu connects the shipment to a specific beamtime. 29 29 ** Select from the **From** drop down the name of your shipping address card and verify that information in it is correct. This can be seen in Shipment tab/Manage Shipping Addresses. 30 30 ** Add to **Comments** any additional information e.g. if you will transport the dewar yourself, or the tracking code for already booked transports. ... ... @@ -43,7 +43,7 @@ 43 43 44 44 == Creating samples == 45 45 46 -Protein names and acronyms are not carried over from the user portal as listing the sample acronyms is currently not demanded in Door. To create a protein,follow these steps (once you have created the protein it will be available in the future experiments) and repeat for each protein in your shipment:46 +Protein names and acronyms are currently not carried over from the user portal. To create a protein follow these steps (once you have created the protein it will be available in the future experiments) and repeat for each protein in your shipment: 47 47 48 48 * Click on **Proteins and Crystals** in the upper menu bar (Fig. 3). 49 49 * Select **Add new protein**. You can also display the **List** to check if the protein is already present. ... ... @@ -58,12 +58,12 @@ 58 58 == Fill the sample information in a CSV file == 59 59 60 60 * After you have added all your proteins to EXI, return to your shipment by selecting **List** in the **Shipment** dropdown menu. In the list of your shipments on the left side of the window (you might need to refresh the page to show the newly created shipment) you find your shipments with the most recently created on top. Click on the shipment card you wish to work on, to open the shipment information. 61 -* While it is possible to insert all the information manually (see next chapter), the most pragmatic way is to upload a CSV file, which you can create from an excel-sheet. In EXI you find an example of how the file should be formatted. 62 -* The upload menu is accessed by clicking the **Import from CSV** button in the shipment card (Fig. 4). The example file below will generate a parcel called Dewar1 containing seven Unipucks full of samples of different proteins. You can add multiple parcels, which are usual lyldewaraor dry shippers, they can hold various number of containers (unipucks, if you are shipping something else, please contact the staff) and samples, which are identified after the protein acronyms you gave in the previous section. Note that the protein + sample name should be unique for theshipment. Errors will be marked red and this disables saving. If you run into trouble, please contact the staff.61 +* While it is possible to insert all the information manually (see next chapter), the most pragmatic way is to upload a CSV file, which you can create from an excel-sheet. In EXI and here underneath you find an example of how the file should be formatted. 62 +* The upload menu is accessed by clicking the **Import from CSV** button in the shipment card (Fig. 4). The example file below will generate a parcel called Dewar1 containing seven Unipucks full of samples of different proteins. You can add multiple parcels, which are usual dewar or dry shippers, they can hold various number of containers (unipucks, if you are shipping something else, please contact the staff) and samples, which are identified after the protein acronyms you gave in the previous section. Note that the protein + sample name should be unique for the whole proposal, not just for one shipment. Errors will be marked red and this disables saving. If you run into trouble, please contact the staff. 63 63 * After saving the sample list, you can edit the information by going to the shipment page, clicking on the containers and selecting **Edit**. That will display the sample list for that container. You can also make corrections to the CSV file, then delete the parcel by clicking on the “Edit” icon to the right of the parcel pane and clicking on **Remove**, and finally reload the corrected CSV again. 64 64 * You can also view the filled up parcel in the shipment page. Once the shipment is complete and you are ready to ship, use the icon to the right to print the shipping labels. Pressing the button next to the airplane sign 'Send shipment to the facility' notifies the beamline staff by email about incoming shipment. Please note, that you still have to order the courier yourself. The tracking code can be added e.g. to the comments field in EXI. 65 65 66 -[[attach:Shipment.csv||target="_blank"]] 66 +[[attach:Shipment.csv||target="_blank"]] 67 67 68 68 [[image:FillSamples.png||height="287" width="700"]] 69 69