Last modified by sndueste on 2025/02/05 15:00
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edited by erlandm
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edited by sndueste
on 2020/02/20 17:24
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1 -= Brief Guide to Computing Resources at FLASH =
1 += Brief User Guide to Computing Resources at FLASH =
2 2  
3 3  \\
4 4  
5 5  == Introduction ==
6 6  
7 -As explained in the [[doc:FLASH.User overview]] page the data recorded at FLASH is stored in an internal DAQ format (.raw) which is converted with a few minutes delay to easily accessible HDF5 ([[doc:FLASHUSER.Data Acquisition and controls.Data Access at FLASH (DAQ, gpfs,\.\.\.).Offline data analysis (DAQ).The FLASH HDF5 structure.WebHome]]) files which are the basis for data analysis. These  files are stored on the [[ASAP3 File System>>url:https://confluence.desy.de/display/ASAP3/ASAP3++Data+Storage+for+PETRA+III||rel="nofollow" shape="rect"]] which is accessible from DESYs  [[Maxwell Cluster>>url:https://confluence.desy.de/display/IS/Maxwell+for+Photon+Science||rel="nofollow" shape="rect"]] which is recommended to be used for the analysis by users. H5py and Pandas allow efficient access to the recorded data in the HDF5 files. In addition the HDF5 files are accessible from the beamline computers and via a web interface:  [[Gamma Portal~[~[image:url:http://hasfweb.desy.de/pub/TWiki/TWikiDocGraphics/external-link.gif~|~|width="13" height="12"~]~]>>url:https://gamma-portal.desy.de||shape="rect"]]
7 +As explained in the [[doc:FLASH.User overview]] page the data recorded at FLASH is stored in an internal DAQ format (.raw) which is converted with a few minutes delay to easily accessible HDF5 ([[doc:FLASHUSER.Data Acquisition and controls.Data Access at FLASH (DAQ, gpfs,\.\.\.).Offline data analysis (DAQ).The FLASH HDF5 structure.WebHome]]) files which are the basis for data analysis. These  files are stored on the [[ASAP3 File System>>url:https://confluence.desy.de/display/ASAP3/ASAP3++Data+Storage+for+PETRA+III||rel="nofollow" shape="rect"]] which is accessible from DESYs  [[Maxwell Cluster>>url:https://confluence.desy.de/display/IS/Maxwell+for+Photon+Science||rel="nofollow" shape="rect"]] which is recommended to be used for the analysis by users. A library provided by FLASH ( [[BeamtimeDaqAccess>>url:https://stash.desy.de/projects/CS/repos/pah||rel="nofollow" shape="rect" class="external-link"]] ) allows efficient access to the recorded data in the HSD5 files. In addition the HDF5 files are accessible from the beamline computers and via a web interface:  [[Gamma Portal~[~[image:url:http://hasfweb.desy.de/pub/TWiki/TWikiDocGraphics/external-link.gif~|~|width="13" height="12"~]~]>>url:https://gamma-portal.desy.de||shape="rect"]]
8 8  
9 9  \\
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23 23  
24 24  \\
25 25  
26 -{{info title="login with functional accounts"}}
26 +{{info title="functional accounts"}}
27 27  **Note**: Please, always do use your personal account to work on the Maxwell cluster or any central DESY computing resources. Don't use the functional accounts like vuvfuser or bl1user. Using functional accounts on shared resources causes many difficult to predict problems, even if it might appear to work for you in the beginning. Also, **never** try to login to **bastion**{{code language="none"}}{{/code}}, **desy-ps-ext**{{code language="none"}}{{/code}}, or **max-display**{{code language="none"}}{{/code}} using one of the functional accounts.
28 28  {{/info}}
29 29  
30 30  == Maxwell cluster ==
31 31  
32 -The extensive documentation can be found at [[Maxwell Cluster>>url:https://confluence.desy.de/display/IS/Photon+Science+on+Maxwell||rel="nofollow" shape="rect"]]
32 +The [[Maxwell Cluster>>url:https://confluence.desy.de/display/IS/Photon+Science+on+Maxwell||rel="nofollow" shape="rect"]] is
33 33  
34 -In particular we want to mention the option [[doc:MXW.JupyterHub on Maxwell]] , available [[doc:IS.Software]] , for more advanced computing demands [[Running Jobs on Maxwell.>>doc:IS.Running Jobs on Maxwell]]
35 -
36 36  \\