Changes for page Collection of HDF5 sample data from different beamlines
Last modified by kutnyakd on 2025/04/03 15:34
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... ... @@ -1,32 +1,39 @@ 1 + 2 + 1 1 {{toc/}} 2 2 5 +\\ 3 3 7 +\\ 4 4 5 5 == how to find the public data in the gamma portal == 6 6 11 +\\ 7 7 8 8 [[image:attach:image2023-9-28_16-42-5.png||height="250"]] 9 9 15 +\\ 10 10 17 +\\ 11 11 12 12 == FL21 == 13 13 14 -=== **Data: 21 +=== **Data: ** === 15 15 16 16 /asap3/flash/gpfs/fl21/2022/data/11015507/raw/hdf/offline/fl2user2~/~/FLASH2_USER2_stream_2_run41519_file1_20211019T152756.1 17 17 18 -=== **analysis file **: === 25 +=== **analysis file **: === 19 19 20 -/asap3/flash/gpfs/fl21/2022/data/11015507/processed/Example_analysis_THz_streaking_run41519.ipynb 27 +/asap3/flash/gpfs/fl21/2022/data/11015507/processed/Example_analysis_THz_streaking_run41519.ipynb 21 21 22 -{{view-file att--filename="Example_analysis_THz_streaking_run41519.pdf" display="thumbnail"/}}29 +{{view-file att--filename="Example_analysis_THz_streaking_run41519.pdf" height="150"/}} 23 23 24 24 === **description**: === 25 25 26 -(% style="color: #333333" %)Experiment: THz streaking(%%)27 -(% style="color: #333333" %)Beamline: FL21(%%)28 -(% style="color: #333333" %)Instrument: THz streaking (%%)29 -(% style="color: #333333" %)Sample: Neon33 +(% style="color: rgb(51,51,51);" %)Experiment: THz streaking(%%) 34 +(% style="color: rgb(51,51,51);" %)Beamline: FL21(%%) 35 +(% style="color: rgb(51,51,51);" %)Instrument: THz streaking (%%) 36 +(% style="color: rgb(51,51,51);" %)Sample: Neon 30 30 31 31 The data was taken as part of the THz streaking photon diagnostic shifts. it contains GMD data and Time of Flight data ( recorded with the FLASH GHz ADCs) as well as beam arrival time (BAM) data. 32 32 ... ... @@ -34,45 +34,41 @@ 34 34 35 35 === **suggested reading:** === 36 36 37 -(% style="color: #172b4d" %)R. Ivanov, (% class="nowrap" %)I. Bermúdez Macias(%%), (% class="nowrap" %)J. Liu(%%), (% class="nowrap" %)G. Brenner(%%), (% class="nowrap" %)J. Roensch-Schulenburg(%%), (% class="nowrap" %)G. Kurdi(%%), (% class="nowrap" %)U. Fruehling, K, Wenig(%%), (% class="nowrap" %)S Walther(%%), (% class="nowrap" %)A Dimitriou(% class="reveal-container reveal-contentreveal-enabled reveal-no-animation reveal-plus-icon" %), (% class="nowrap reveal-container reveal-contentreveal-enabled reveal-no-animation reveal-plus-icon" %)M Drescher(% class="reveal-container reveal-contentreveal-enabled reveal-no-animation reveal-plus-icon" %), (% class="nowrap reveal-container reveal-contentreveal-enabled reveal-no-animation reveal-plus-icon" %)I P Sazhina(% class="reveal-container reveal-contentreveal-enabled reveal-no-animation reveal-plus-icon" %), (% class="nowrap reveal-container reveal-contentreveal-enabled reveal-no-animation reveal-plus-icon" %)A K Kazansky(% class="reveal-container reveal-contentreveal-enabled reveal-no-animation reveal-plus-icon" %), (% class="nowrap reveal-container reveal-contentreveal-enabled reveal-no-animation reveal-plus-icon" %)N M Kabachnik(% class="reveal-container reveal-contentreveal-enabled reveal-no-animation reveal-plus-icon" %)nowrap reveal-container reveal-contentreveal-enabled reveal-no-animation reveal-plus-icon" %)S. Düsterer(%%)38 -(% style="text-align:left" %)//Single-shot temporal characterization of XUV pulses with duration from ~~10 fs to ~~350 fs at FLASH// (%%)39 -(% style="color: #172b4d" %)J. Phys. B: At. Mol. Opt. Phys. (2020)(%%)40 -(% class="Object" %) __[[https:~~/~~/doi.org/10.1088/1361-6455/ab9c38>>url:https://doi.org/10.1088/1361-6455/ab9c38||rel="nofollow" shape="rect" class="external-link"]]__44 +(% style="color: rgb(23,43,77);" %)R. Ivanov, (% class="nowrap" %)I. Bermúdez Macias(%%), (% class="nowrap" %)J. Liu(%%), (% class="nowrap" %)G. Brenner(%%), (% class="nowrap" %)J. Roensch-Schulenburg(%%), (% class="nowrap" %)G. Kurdi(%%), (% class="nowrap" %)U. Fruehling, K, Wenig(%%), (% class="nowrap" %)S Walther(%%), (% class="nowrap" %)A Dimitriou(% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation" %), (% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation nowrap" %)M Drescher(% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation" %), (% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation nowrap" %)I P Sazhina(% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation" %), (% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation nowrap" %)A K Kazansky(% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation" %), (% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation nowrap" %)N M Kabachnik(% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation" %) and (% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation nowrap" %)S. Düsterer(%%) 45 +(% style="text-align: left;" %)//Single-shot temporal characterization of XUV pulses with duration from ~~10 fs to ~~350 fs at FLASH//__ 46 +__(% style="color: rgb(23,43,77);" %)J. Phys. B: At. Mol. Opt. Phys. (2020)(% style="text-align: left;" %)__ 47 +(% class="Object" %)[[https:~~/~~/doi.org/10.1088/1361-6455/ab9c38>>url:https://doi.org/10.1088/1361-6455/ab9c38||rel="nofollow" shape="rect" class="external-link"]](%%)__ 41 41 42 42 Dennis Mayer, Fabiano Lever and Markus Gühr, ** ** 43 -//Data analysis procedures for time-resolved x-ray photoelectron spectroscopy at a SASE free-electron-laser, //44 -Phys. B: At. Mol. Opt. Phys. **55**, 054002 (2022); [[https:~~/~~/doi.org/10.1088/1361-6455/ac3c91>>url:https://doi.org/10.1088/1361-6455/ac3c91||rel="nofollow" shape="rect" class="external-link"]] 50 +//Data analysis procedures for time-resolved x-ray photoelectron spectroscopy at a SASE free-electron-laser, 51 +//Phys. B: At. Mol. Opt. Phys. **55**, 054002 (2022); [[https:~~/~~/doi.org/10.1088/1361-6455/ac3c91>>url:https://doi.org/10.1088/1361-6455/ac3c91||rel="nofollow" shape="rect" class="external-link"]] 45 45 53 +\\ 46 46 47 47 == FL24 == 48 48 49 -=== **Data: 57 +=== **Data: ** === 50 50 51 -/asap3/flash/gpfs/fl24/2023/data/11017906/raw/hdf/offline/fl2user1/ 59 +/asap3/flash/gpfs/fl24/2023/data/11017906/raw/hdf/offline/fl2user1/FLASH2_USER1_stream_2_run43722_file1_20221216T205953.1.h5 52 52 61 +\\ 53 53 54 -=== **analysis file **: === 63 +=== **analysis file **: === 55 55 56 - fl24/2023/data/11017906/shared/data_loading.ipynb65 +/asap3/flash/gpfs/ 57 57 58 -{{view-file att--filename="data_loading.pdf" display="thumbnail"/}} 59 - 60 -[[attach:data_loading.pdf||target="_blank"]] 61 - 62 -and other python files in this folder 63 - 64 64 === **description**: === 65 65 66 -(% style="color: #333333" %)Experiment: Photoelectron spectroscopy(%%)67 -(% style="color: #333333" %)Beamline: FL24(%%)68 -(% style="color: #333333" %)Instrument: URSAPQ(%%)69 -(% style="color: #333333" %)Sample: ?69 +(% style="color: rgb(51,51,51);" %)Experiment: Photoelectron spectroscopy(%%) 70 +(% style="color: rgb(51,51,51);" %)Beamline: FL24(%%) 71 +(% style="color: rgb(51,51,51);" %)Instrument: URSAPQ(%%) 72 +(% style="color: rgb(51,51,51);" %)Sample: ? 70 70 71 71 === **suggested reading:** === 72 72 73 73 Jan Metje, Fabiano Lever, Dennis Mayer, Richard James Squibb, Matthew S. Robinson, Mario Niebuhr, Raimund Feifel, Stefan Düsterer, Markus Gühr, 74 74 //URSA-PQ: A Mobile and Flexible Pump-Probe Instrument for Gas Phase Samples at the FLASH Free Electron Laser//, 75 -Appl. Sci. **10**, 7882 (2020); [[http:~~/~~/dx.doi.org/10.3390/app10217882>>url:http://dx.doi.org/10.3390/app10217882||s hape="rect" style="text-decoration: none;"]]78 +Appl. Sci. **10**, 7882 (2020); [[http:~~/~~/dx.doi.org/10.3390/app10217882>>url:http://dx.doi.org/10.3390/app10217882||style="text-decoration: none;" shape="rect"]] 76 76 77 77 == PG1 == 78 78 ... ... @@ -80,41 +80,44 @@ 80 80 81 81 /asap3/flash/gpfs/pg1/2023/data/11017909/raw/hdf/offline/fl1user3 82 82 83 -(% style="color: #333333" %)runs 43622 and 43624 (25 GB in total)86 +(% style="color: rgb(51,51,51);" %)runs 43622 and 43624 (25 GB in total) 84 84 85 -=== **analysis file **: === 88 +=== **analysis file **: === 86 86 87 -asap3/flash/gpfs/pg1/2023/data/11017909/processed/[[attach:PG1_data_analysis_Si_example_FAB.ipynb]] (version using the new FAB library) 90 +asap3/flash/gpfs/pg1/2023/data/11017909/processed/[[attach:PG1_data_analysis_Si_example_FAB.ipynb]] (version using the new FAB library) 88 88 92 +{{view-file att--filename="PG1_data_analysis_Si_example_FAB.pdf" height="150"/}} 89 89 90 -asap3/flash/gpfs/pg1/2023/data/11017909/processed/previous_analysis/[[attach:PG1_data_analysis_Si_example.ipynb]] (version using the depreciated flashdaqhdfutils library ) 94 +asap3/flash/gpfs/pg1/2023/data/11017909/processed/previous_analysis/[[attach:PG1_data_analysis_Si_example.ipynb]] (version using the depreciated flashdaqhdfutils library ) 91 91 92 -{{view-file att--filename="PG1_data_analysis_Si_example.pdf" display="thumbnail"/}}96 +{{view-file att--filename="PG1_data_analysis_Si_example.pdf" height="150"/}} 93 93 94 94 === 95 -(% style="color: #333333" %)** Description:**(%%) ===99 +(% style="color: rgb(51,51,51);" %)** Description:**(%%) === 96 96 97 -(% style="color: #333333" %) Experiment: time-resolved RIXS(%%)98 -(% style="color: #333333" %) Beamline: PG1(%%)99 -(% style="color: #333333" %) Instrument: TRIXS end station(%%)100 -(% style="color: #333333" %) Sample: Si(%%)101 -\\(% style="color: #333333" %) Sample was pumped with an optical laser and probed via soft X-ray RIXS by(%%)102 -(% style="color: #333333" %) varying the time delay between the optical laser and FEL.(%%)103 -(% style="color: #333333" %) Time delay was changed repeatedly from 2935 ps to 2939 ps (these are the delay(%%)104 -(% style="color: #333333" %) line encoder values of the optical laser ) in steps of 400fs, 1000 samples per(%%)105 -(% style="color: #333333" %) delay step.(%%)106 -\\(% style="color: #333333" %) RIXS images were collected via CCD camera (not full chip, only narrow region of(%%)107 -(% style="color: #333333" %) interest), operated in long exposure mode of 5 sec (integrating several FEL(%%)108 -(% style="color: #333333" %) trains per image).(%%)109 - 101 +(% style="color: rgb(51,51,51);" %) Experiment: time-resolved RIXS(%%) 102 +(% style="color: rgb(51,51,51);" %) Beamline: PG1(%%) 103 +(% style="color: rgb(51,51,51);" %) Instrument: TRIXS end station(%%) 104 +(% style="color: rgb(51,51,51);" %) Sample: Si(%%) 105 +\\(% style="color: rgb(51,51,51);" %) Sample was pumped with an optical laser and probed via soft X-ray RIXS by(%%) 106 +(% style="color: rgb(51,51,51);" %) varying the time delay between the optical laser and FEL.(%%) 107 +(% style="color: rgb(51,51,51);" %) Time delay was changed repeatedly from 2935 ps to 2939 ps (these are the delay(%%) 108 +(% style="color: rgb(51,51,51);" %) line encoder values of the optical laser ) in steps of 400fs, 1000 samples per(%%) 109 +(% style="color: rgb(51,51,51);" %) delay step.(%%) 110 +\\(% style="color: rgb(51,51,51);" %) RIXS images were collected via CCD camera (not full chip, only narrow region of(%%) 111 +(% style="color: rgb(51,51,51);" %) interest), operated in long exposure mode of 5 sec (integrating several FEL(%%) 112 +(% style="color: rgb(51,51,51);" %) trains per image).(%%) 113 +\\ 110 110 111 111 === **suggested reading:** === 112 112 113 113 S. Dziarzhytski, M. Biednov, B. Dicke, A. Wang, P. S. Miedema, R. Y. Engel, J. O. Schunck, H. Redlin, H. Weigelt, F. Siewert, C. Behrens, M. Sinha, A. Schulte, B. Grimm-Lebsanft, S. G. Chiuzbăian, W. Wurth, M. Beye, M. Rübhausen, and G. Brenner, 114 114 //The TRIXS end-station for femtosecond time-resolved resonant inelastic x-ray scattering experiments at the soft x-ray free-electron laser FLASH//, 115 -Struct. Dyn. **7**, 054301 (2020); [[https:~~/~~/doi.org/10.1063/4.0000029>>url:https://doi.org/10.1063/4.0000029||s hape="rect" style="text-decoration: none;"]]119 +Struct. Dyn. **7**, 054301 (2020); [[https:~~/~~/doi.org/10.1063/4.0000029>>url:https://doi.org/10.1063/4.0000029||style="text-decoration: none;" shape="rect"]] 116 116 121 +\\ 117 117 123 +\\ 118 118 119 119 == PG2 / HEXTOF == 120 120 ... ... @@ -122,47 +122,33 @@ 122 122 123 123 /asap3/flash/gpfs/pg2/2023/data/11019101/raw/hdf/offline/fl1user3/ 124 124 125 -Runs for standard example of hextof workflow (from Spin-Gd/W(110) beamtime, ID 11013410):131 +Runs: 126 126 127 127 * 44762 - chessy sample for PEEM mode calibration 128 128 * 44797 - energy calibration 129 -* 44798 and 44799 - optical spot profile with two different fluences135 +* 44798 and 44799 - optical spot profile 130 130 * 44824, 44825, 44826 and 44827 - trMM data 131 131 132 -(% style="color: #333333" %)(3.5 GB in total)138 +(% style="color: rgb(51,51,51);" %)(3.5 GB in total) 133 133 134 -=== ==**analysis file**: =====140 +=== **analysis file **: === 135 135 136 -/asap3/flash/gpfs/pg2/2023/data/11019101/processed/ 4_hextof_workflow.ipynb142 +/asap3/flash/gpfs/pg2/2023/data/11019101/processed/... 137 137 138 -__ __ 139 - 140 -Runs for example of BAM corrections (from H. Bentmann beamtime, ID 11013426): 141 - 142 -* 44455 - energy calibration for W4f core level lines 143 -* 44498 - trXPS dataset - t0 using side bands on W4f for BAM correction 144 - 145 -(0.9 GB in total) 146 - 147 -===== **analysis file**: ===== 148 - 149 -/asap3/flash/gpfs/pg2/2023/data/11019101/processed/hextof_workflow_bam_correction.ipynb - coming soon 150 - 151 - 152 152 === 153 -(% style="color: #333333" %)** Description:**(%%) ===145 +(% style="color: rgb(51,51,51);" %)** Description:**(%%) === 154 154 155 -(% style="color: #333333" %) Experiment: time-resolved momentum microscopy(%%)156 -(% style="color: #333333" %) Beamline: PG2(%%)157 -(% style="color: #333333" %) Instrument: HEXTOF(%%)158 -(% style="color: #333333" %) Samples: Chessy and Gd/W(110)(%%)159 - 147 +(% style="color: rgb(51,51,51);" %) Experiment: time-resolved momentum microscopy(%%) 148 +(% style="color: rgb(51,51,51);" %) Beamline: PG2(%%) 149 +(% style="color: rgb(51,51,51);" %) Instrument: HEXTOF(%%) 150 +(% style="color: rgb(51,51,51);" %) Samples: Chessy and Gd/W(110)(%%) 151 +\\ 160 160 161 161 Run 44762 was measured with a Hg lamp on the test "Chessy" sample to calibrate FoV in µm in the PEEM mode. 162 162 163 -Runs 44798 and 44799 - optical spot profile measured in PEEM mode under the same settings as run 44762 164 -with two different attenuations of the pump laser to determine the spot size of the pump laser. 165 -This is needed to estimate pump fluence during trMM runs (44824, 44825, 44826 and 44827) using values 155 +Runs 44798 and 44799 - optical spot profile measured in PEEM mode under the same settings as run 44762 156 +with two different attenuations of the pump laser to determine the spot size of the pump laser. 157 +This is needed to estimate pump fluence during trMM runs (44824, 44825, 44826 and 44827) using values 166 166 of I,,0,, monitor of the pump laser. 167 167 168 168 Runs 44797 - measured with 36.2 eV in k-mode with manually variable sample bias from 28 to 32V by 1 V ... ... @@ -169,8 +169,8 @@ 169 169 every 2000 shots to calibrate the energy scale. 170 170 This energy calibration has to be used for trMM data. 171 171 172 -Runs 44824, 44825, 44826 and 44827 were measured (% style="color: #333333" %)from Gd/W(110) sample which was pumped with173 -a 1030 nm s-polarized optical laser and probed with 36.2 eV for time-resolved momentum microscopy (trARPES) 164 +Runs 44824, 44825, 44826 and 44827 were measured (% style="color: rgb(51,51,51);" %)from Gd/W(110) sample which was pumped with 165 +a 1030 nm s-polarized optical laser and probed with 36.2 eV for time-resolved momentum microscopy (trARPES) 174 174 varying the time delay between the optical laser and FEL. The time delay was changed in ZigZag manner repeatedly 175 175 from 1462.00 ps to 1464.85 ps with 200 steps and 1 sec waiting time at each step. 176 176 ... ... @@ -180,7 +180,9 @@ 180 180 //Time- and momentum-resolved photoemission studies using time-of-flight momentum microscopy at a free-electron laser//, 181 181 Rev. Sci. Instrum. **91**, 013109 (2020); 182 182 [[https:~~/~~/doi.org/10.1063/1.5118777>>url:https://doi.org/10.1063/1.5118777||rel="nofollow" shape="rect" class="external-link"]] 183 -1. Single Event Data Frame Processor used as a backend to handle photoelectron resolved data 175 +1. Single Event Data Frame Processor used as a backend to handle photoelectron resolved datastreams 184 184 [[https:~~/~~/github.com/OpenCOMPES/sed>>url:https://github.com/OpenCOMPES/sed||shape="rect"]] 185 -1. Tutorial of typical data analysis workflow using sample data 186 -[[https:~~/~~/opencompes.github.io/sed/tutorial/4_hextof_workflow.html#>>https://opencompes.github.io/sed/tutorial/4_hextof_workflow.html#]] 177 + 178 +\\ 179 + 180 +\\
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