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From version 16.3
edited by sndueste
on 2024/09/18 11:05
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To version 1.1
edited by sndueste
on 2023/09/28 16:32
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Summary

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1 -{{toc/}}
2 2  
3 3  
3 +{{toc/}}
4 4  
5 -== how to find the public data in the gamma portal ==
6 -
7 -
8 -[[image:attach:image2023-9-28_16-42-5.png||height="250"]]
9 -
10 -
11 -== How to look at the sample scripts ? ==
12 -
13 -for some Beamlines implemented an **online execution option** for the sample scripts
14 -
15 -see the [[ Video how to use the tool>>https://syncandshare.desy.de/index.php/s/4qYwkWqQW2czj3x]]
16 -
17 -and the link to the tool :
18 -
19 -
20 20  == FL21 ==
21 21  
22 -=== **Data:   ** ===
7 +=== **Data:  ** ===
23 23  
24 24  /asap3/flash/gpfs/fl21/2022/data/11015507/raw/hdf/offline/fl2user2~/~/FLASH2_USER2_stream_2_run41519_file1_20211019T152756.1
25 25  
26 -=== **analysis file **: ===
11 +=== **analysis file **: ===
27 27  
28 -/asap3/flash/gpfs/fl21/2022/data/11015507/processed/Example_analysis_THz_streaking_run41519.ipynb     
13 +/asap3/flash/gpfs/fl21/2022/data/11015507/processed/Example_analysis_THz_streaking_run41519.ipynb 
29 29  
30 -{{view-file att--filename="Example_analysis_THz_streaking_run41519.pdf" display="thumbnail"/}}
15 +{{view-file att--filename="Example_analysis_THz_streaking_run41519.pdf" height="150"/}}
31 31  
32 32  === **description**: ===
33 33  
34 -(% style="color:#333333" %)Experiment: THz streaking(%%)
35 -(% style="color:#333333" %)Beamline: FL21(%%)
36 -(% style="color:#333333" %)Instrument: THz streaking (%%)
37 -(% style="color:#333333" %)Sample: Neon
19 +(% style="color: rgb(51,51,51);" %)Experiment: THz streaking(%%)
20 +(% style="color: rgb(51,51,51);" %)Beamline: FL21(%%)
21 +(% style="color: rgb(51,51,51);" %)Instrument: THz streaking (%%)
22 +(% style="color: rgb(51,51,51);" %)Sample: Neon
38 38  
39 39  The data was taken as part of the THz streaking photon diagnostic shifts. it contains GMD data and Time of Flight data ( recorded with the FLASH GHz ADCs) as well as beam arrival time (BAM) data.
40 40  
... ... @@ -42,44 +42,41 @@
42 42  
43 43  === **suggested reading:** ===
44 44  
45 -(% style="color:#172b4d" %)R. Ivanov, (% class="nowrap" %)I. Bermúdez Macias(%%), (% class="nowrap" %)J. Liu(%%), (% class="nowrap" %)G. Brenner(%%), (% class="nowrap" %)J. Roensch-Schulenburg(%%), (% class="nowrap" %)G. Kurdi(%%), (% class="nowrap" %)U. Fruehling, K, Wenig(%%), (% class="nowrap" %)S Walther(%%), (% class="nowrap" %)A Dimitriou(% class="reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %), (% class="nowrap reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %)M Drescher(% class="reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %), (% class="nowrap reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %)I P Sazhina(% class="reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %), (% class="nowrap reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %)A K Kazansky(% class="reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %), (% class="nowrap reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %)N M Kabachnik(% class="reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %) and (% class="nowrap reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %)S. Düsterer(%%)
46 -(% style="text-align:left" %)//Single-shot temporal characterization of XUV pulses with duration from ~~10 fs to ~~350 fs at FLASH//(%%)
47 -(% style="color:#172b4d" %)J. Phys. B: At. Mol. Opt. Phys. (2020)(%%)
48 -(% class="Object" %)__[[https:~~/~~/doi.org/10.1088/1361-6455/ab9c38>>url:https://doi.org/10.1088/1361-6455/ab9c38||rel="nofollow" shape="rect" class="external-link"]]__
30 +(% style="color: rgb(23,43,77);" %)R. Ivanov, (% class="nowrap" %)I. Bermúdez Macias(%%), (% class="nowrap" %)J. Liu(%%), (% class="nowrap" %)G. Brenner(%%), (% class="nowrap" %)J. Roensch-Schulenburg(%%), (% class="nowrap" %)G. Kurdi(%%), (% class="nowrap" %)U. Fruehling, K, Wenig(%%), (% class="nowrap" %)S Walther(%%), (% class="nowrap" %)A Dimitriou(% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation" %), (% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation nowrap" %)M Drescher(% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation" %), (% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation nowrap" %)I P Sazhina(% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation" %), (% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation nowrap" %)A K Kazansky(% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation" %), (% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation nowrap" %)N M Kabachnik(% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation" %) and (% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation nowrap" %)S. Düsterer(%%)
31 +(% style="text-align: left;" %)//Single-shot temporal characterization of XUV pulses with duration from ~~10 fs to ~~350 fs at FLASH//__
32 +__(% style="color: rgb(23,43,77);" %)J. Phys. B: At. Mol. Opt. Phys. (2020)(% style="text-align: left;" %)__
33 +(% class="Object" %)[[https:~~/~~/doi.org/10.1088/1361-6455/ab9c38>>url:https://doi.org/10.1088/1361-6455/ab9c38||rel="nofollow" shape="rect" class="external-link"]](%%)__
49 49  
50 50  Dennis Mayer, Fabiano Lever and Markus Gühr,  ** **
51 -//Data analysis procedures for time-resolved x-ray photoelectron spectroscopy at a SASE free-electron-laser,//
52 -Phys. B: At. Mol. Opt. Phys. **55**, 054002 (2022); [[https:~~/~~/doi.org/10.1088/1361-6455/ac3c91>>url:https://doi.org/10.1088/1361-6455/ac3c91||rel="nofollow" shape="rect" class="external-link"]]
36 +//Data analysis procedures for time-resolved x-ray photoelectron spectroscopy at a SASE free-electron-laser,
37 +//Phys. B: At. Mol. Opt. Phys. **55**, 054002 (2022); [[https:~~/~~/doi.org/10.1088/1361-6455/ac3c91>>url:https://doi.org/10.1088/1361-6455/ac3c91||rel="nofollow" shape="rect" class="external-link"]]
53 53  
39 +\\
54 54  
55 55  == FL24 ==
56 56  
57 -=== **Data:   ** ===
43 +=== **Data:  ** ===
58 58  
59 -/asap3/flash/gpfs/fl24/2023/data/11017906/raw/hdf/offline/fl2user1/
45 +/asap3/flash/gpfs/fl24/2023/data/11017906/raw/hdf/offline/fl2user1/FLASH2_USER1_stream_2_run43722_file1_20221216T205953.1.h5
60 60  
47 +\\
61 61  
62 -=== **analysis file **: ===
49 +=== **analysis file **: ===
63 63  
64 - asap3/flash/gpfs/fl24/2023/data/11017906/shared/data_loading.ipynb
51 +/asap3/flash/gpfs/
65 65  
66 -{{view-file att--filename="data_loading.pdf" display="thumbnail"/}}
67 -
68 -
69 -and other python files in this folder
70 -
71 71  === **description**: ===
72 72  
73 -(% style="color:#333333" %)Experiment: Photoelectron spectroscopy(%%)
74 -(% style="color:#333333" %)Beamline: FL24(%%)
75 -(% style="color:#333333" %)Instrument: URSAPQ(%%)
76 -(% style="color:#333333" %)Sample:  ?
55 +(% style="color: rgb(51,51,51);" %)Experiment: Photoelectron spectroscopy(%%)
56 +(% style="color: rgb(51,51,51);" %)Beamline: FL24(%%)
57 +(% style="color: rgb(51,51,51);" %)Instrument: URSAPQ(%%)
58 +(% style="color: rgb(51,51,51);" %)Sample:  ?
77 77  
78 78  === **suggested reading:** ===
79 79  
80 80  Jan Metje, Fabiano Lever, Dennis Mayer, Richard James Squibb, Matthew S. Robinson, Mario Niebuhr, Raimund Feifel, Stefan Düsterer, Markus Gühr,
81 81  //URSA-PQ: A Mobile and Flexible Pump-Probe Instrument for Gas Phase Samples at the FLASH Free Electron Laser//,
82 -Appl. Sci. **10**, 7882 (2020); [[http:~~/~~/dx.doi.org/10.3390/app10217882>>url:http://dx.doi.org/10.3390/app10217882||shape="rect" style="text-decoration: none;"]]
64 +Appl. Sci. **10**, 7882 (2020); [[http:~~/~~/dx.doi.org/10.3390/app10217882>>url:http://dx.doi.org/10.3390/app10217882||style="text-decoration: none;" shape="rect"]]
83 83  
84 84  == PG1 ==
85 85  
... ... @@ -87,41 +87,44 @@
87 87  
88 88  /asap3/flash/gpfs/pg1/2023/data/11017909/raw/hdf/offline/fl1user3
89 89  
90 -(% style="color:#333333" %)runs 43622 and 43624  (25 GB in total)
72 +(% style="color: rgb(51,51,51);" %)runs 43622 and 43624  (25 GB in total)
91 91  
92 -=== **analysis file **: ===
74 +=== **analysis file **: ===
93 93  
94 -asap3/flash/gpfs/pg1/2023/data/11017909/processed/[[attach:PG1_data_analysis_Si_example_FAB.ipynb]] (version using the new FAB library)
76 +asap3/flash/gpfs/pg1/2023/data/11017909/processed/[[attach:PG1_data_analysis_Si_example_FAB.ipynb]] (version using the new FAB library) 
95 95  
78 +{{view-file att--filename="PG1_data_analysis_Si_example_FAB.pdf" height="150"/}}
96 96  
97 -asap3/flash/gpfs/pg1/2023/data/11017909/processed/previous_analysis/[[attach:PG1_data_analysis_Si_example.ipynb]] (version using the depreciated flashdaqhdfutils library )
80 +asap3/flash/gpfs/pg1/2023/data/11017909/processed/previous_analysis/[[attach:PG1_data_analysis_Si_example.ipynb]] (version using the depreciated flashdaqhdfutils library ) 
98 98  
99 -{{view-file att--filename="PG1_data_analysis_Si_example.pdf" display="thumbnail"/}}
82 +{{view-file att--filename="PG1_data_analysis_Si_example.pdf" height="150"/}}
100 100  
101 101  ===
102 -(% style="color:#333333" %)** Description:**(%%) ===
85 +(% style="color: rgb(51,51,51);" %)** Description:**(%%) ===
103 103  
104 -(% style="color:#333333" %) Experiment: time-resolved RIXS(%%)
105 -(% style="color:#333333" %) Beamline: PG1(%%)
106 -(% style="color:#333333" %) Instrument: TRIXS end station(%%)
107 -(% style="color:#333333" %) Sample: Si(%%)
108 -\\(% style="color:#333333" %) Sample was pumped with an optical laser and probed via soft X-ray RIXS by(%%)
109 -(% style="color:#333333" %) varying the time delay between the optical laser and FEL.(%%)
110 -(% style="color:#333333" %) Time delay was changed repeatedly from 2935 ps to 2939 ps (these are the delay(%%)
111 -(% style="color:#333333" %) line encoder values of the optical laser ) in steps of 400fs, 1000 samples per(%%)
112 -(% style="color:#333333" %) delay step.(%%)
113 -\\(% style="color:#333333" %) RIXS images were collected via CCD camera (not full chip, only narrow region of(%%)
114 -(% style="color:#333333" %) interest), operated in long exposure mode of 5 sec (integrating several FEL(%%)
115 -(% style="color:#333333" %) trains per image).(%%)
116 -
87 +(% style="color: rgb(51,51,51);" %) Experiment: time-resolved RIXS(%%)
88 +(% style="color: rgb(51,51,51);" %) Beamline: PG1(%%)
89 +(% style="color: rgb(51,51,51);" %) Instrument: TRIXS end station(%%)
90 +(% style="color: rgb(51,51,51);" %) Sample: Si(%%)
91 +\\(% style="color: rgb(51,51,51);" %) Sample was pumped with an optical laser and probed via soft X-ray RIXS by(%%)
92 +(% style="color: rgb(51,51,51);" %) varying the time delay between the optical laser and FEL.(%%)
93 +(% style="color: rgb(51,51,51);" %) Time delay was changed repeatedly from 2935 ps to 2939 ps (these are the delay(%%)
94 +(% style="color: rgb(51,51,51);" %) line encoder values of the optical laser ) in steps of 400fs, 1000 samples per(%%)
95 +(% style="color: rgb(51,51,51);" %) delay step.(%%)
96 +\\(% style="color: rgb(51,51,51);" %) RIXS images were collected via CCD camera (not full chip, only narrow region of(%%)
97 +(% style="color: rgb(51,51,51);" %) interest), operated in long exposure mode of 5 sec (integrating several FEL(%%)
98 +(% style="color: rgb(51,51,51);" %) trains per image).(%%)
99 +\\
117 117  
118 118  === **suggested reading:** ===
119 119  
120 120  S. Dziarzhytski, M. Biednov, B. Dicke, A. Wang, P. S. Miedema, R. Y. Engel, J. O. Schunck, H. Redlin, H. Weigelt, F. Siewert, C. Behrens, M. Sinha, A. Schulte, B. Grimm-Lebsanft, S. G. Chiuzbăian, W. Wurth, M. Beye, M. Rübhausen, and G. Brenner,
121 121  //The TRIXS end-station for femtosecond time-resolved resonant inelastic x-ray scattering experiments at the soft x-ray free-electron laser FLASH//,
122 -Struct. Dyn. **7**, 054301 (2020); [[https:~~/~~/doi.org/10.1063/4.0000029>>url:https://doi.org/10.1063/4.0000029||shape="rect" style="text-decoration: none;"]]
105 +Struct. Dyn. **7**, 054301 (2020); [[https:~~/~~/doi.org/10.1063/4.0000029>>url:https://doi.org/10.1063/4.0000029||style="text-decoration: none;" shape="rect"]]
123 123  
107 +\\
124 124  
109 +\\
125 125  
126 126  == PG2 / HEXTOF ==
127 127  
... ... @@ -129,65 +129,45 @@
129 129  
130 130  /asap3/flash/gpfs/pg2/2023/data/11019101/raw/hdf/offline/fl1user3/
131 131  
132 -Runs for standard example of hextof workflow (from Spin-Gd/W(110) beamtime, ID 11013410):
117 +Runs:
133 133  
134 134  * 44762 - chessy sample for PEEM mode calibration
135 135  * 44797 - energy calibration
136 -* 44798 and 44799 - optical spot profile with two different fluences
121 +* 44798 and 44799 - optical spot profile
137 137  * 44824, 44825, 44826 and 44827 - trMM data
138 138  
139 -(% style="color:#333333" %)(3.5 GB in total)
124 +(% style="color: rgb(51,51,51);" %)(3.5 GB in total)
140 140  
141 -===== **analysis file**: =====
126 +=== **analysis file **: ===
142 142  
143 -/asap3/flash/gpfs/pg2/2023/data/11019101/processed/4_hextof_workflow.ipynb
128 +/asap3/flash/gpfs/pg2/2023/data/11019101/processed/...
144 144  
145 -__ __
130 +===
131 +(% style="color: rgb(51,51,51);" %)** Description:**(%%) ===
146 146  
147 -Runs for example of BAM corrections (from H. Bentmann beamtime, ID 11013426):
133 +(% style="color: rgb(51,51,51);" %) Experiment: HEXTOF ????(%%)
134 +(% style="color: rgb(51,51,51);" %) Beamline: PG2(%%)
135 +(% style="color: rgb(51,51,51);" %) Instrument: HEXTOF(%%)
136 +(% style="color: rgb(51,51,51);" %) Sample: ????(%%)
137 +\\(% style="color: rgb(51,51,51);" %) .... to be filled in ....
148 148  
149 -* 44455 - energy calibration for W4f core level lines
150 -* 44498 - trXPS dataset - t0 using side bands on W4f for BAM correction
139 +=== **suggested reading:** ===
151 151  
152 -(0.9 GB in total)
141 +1. D. Kutnyakhov, R.P. Xian, M. Dendzik, M. Heber, F. Pressacco, S.Y.  Agustsson, L. Wenthaus, H. Meyer, S. Gieschen, G. Mercurio, A. Benz, K. Bühlman, S. Däster, R. Gort, D. Curcio, K. Volckaert, M. Bianchi, Ch. Sanders, J A. Miwa, S. Ulstrup, A. Oelsner, C. Tusche, Y.-J. Chen, D. Vasilyev, K. Medjanik, G. Brenner, S. Dziarzhytski, H. Redlin, B. Manschwetus, S. Dong, J. Hauer, L. Rettig, F. Diekmann, K. Rossnagel, J. Demsar, H.-J. Elmers, Ph. Hofmann, R. Ernstorfer, G. Schönhense, Y. Acremann, and W. Wurth,
142 +//Time- and momentum-resolved photoemission studies using time-of-flight momentum microscopy at a free-electron laser//,
143 +Rev. Sci. Instrum. **91**, 013109 (2020);
144 +[[https:~~/~~/doi.org/10.1063/1.5118777>>url:https://doi.org/10.1063/1.5118777||rel="nofollow" shape="rect" class="external-link"]]
153 153  
154 -===== **analysis file**: =====
146 +\\
155 155  
156 -/asap3/flash/gpfs/pg2/2023/data/11019101/processed/hextof_workflow_bam_correction.ipynb - coming soon
148 +\\
157 157  
150 +== how to find the public data in the gamma portal ==
158 158  
159 -===
160 -(% style="color:#333333" %)** Description:**(%%) ===
152 +\\
161 161  
162 -(% style="color:#333333" %) Experiment: time-resolved momentum microscopy(%%)
163 -(% style="color:#333333" %) Beamline: PG2(%%)
164 -(% style="color:#333333" %) Instrument: HEXTOF(%%)
165 -(% style="color:#333333" %) Samples: Chessy and Gd/W(110)(%%)
166 -
154 +[[image:attach:image2023-4-6_11-0-45.png||height="250"]]
167 167  
168 -Run 44762 was measured with a Hg lamp on the test "Chessy" sample to calibrate FoV in µm in the PEEM mode.
156 +\\
169 169  
170 -Runs 44798 and 44799 - optical spot profile measured in PEEM mode under the same settings as run 44762
171 -with two different attenuations of the pump laser to determine the spot size of the pump laser.
172 -This is needed to estimate pump fluence during trMM runs (44824, 44825, 44826 and 44827) using values
173 -of I,,0,, monitor of the pump laser.
174 -
175 -Runs 44797 - measured with 36.2 eV in k-mode with manually variable sample bias from 28 to 32V by 1 V 
176 -every 2000 shots to calibrate the energy scale.
177 -This energy calibration has to be used for trMM data.
178 -
179 -Runs 44824, 44825, 44826 and 44827 were measured (% style="color:#333333" %)from Gd/W(110) sample which was pumped with
180 -a 1030 nm s-polarized optical laser and probed with 36.2 eV for time-resolved momentum microscopy (trARPES)
181 -varying the time delay between the optical laser and FEL. The time delay was changed in ZigZag manner repeatedly
182 -from 1462.00 ps to 1464.85 ps with 200 steps and 1 sec waiting time at each step.
183 -
184 -=== **suggested reading:** ===
185 -
186 -1. D. Kutnyakhov, R.P. Xian, M. Dendzik, M. Heber, F. Pressacco, S.Y.  Agustsson, L. Wenthaus, H. Meyer, S. Gieschen, G. Mercurio, A. Benz, K. Bühlman, S. Däster, R. Gort, D. Curcio, K. Volckaert, M. Bianchi, Ch. Sanders, J A. Miwa, S. Ulstrup, A. Oelsner, C. Tusche, Y.-J. Chen, D. Vasilyev, K. Medjanik, G. Brenner, S. Dziarzhytski, H. Redlin, B. Manschwetus, S. Dong, J. Hauer, L. Rettig, F. Diekmann, K. Rossnagel, J. Demsar, H.-J. Elmers, Ph. Hofmann, R. Ernstorfer, G. Schönhense, Y. Acremann, and W. Wurth,
187 -//Time- and momentum-resolved photoemission studies using time-of-flight momentum microscopy at a free-electron laser//,
188 -Rev. Sci. Instrum. **91**, 013109 (2020);
189 -[[https:~~/~~/doi.org/10.1063/1.5118777>>url:https://doi.org/10.1063/1.5118777||rel="nofollow" shape="rect" class="external-link"]]
190 -1. Single Event Data Frame Processor used as a backend to handle photoelectron resolved data streams
191 -[[https:~~/~~/github.com/OpenCOMPES/sed>>url:https://github.com/OpenCOMPES/sed||shape="rect"]]
192 -1. Tutorial of typical data analysis workflow using sample data
193 -[[https:~~/~~/opencompes.github.io/sed/tutorial/4_hextof_workflow.html#>>https://opencompes.github.io/sed/tutorial/4_hextof_workflow.html#]]
158 +\\
Example_analysis_THz_streaking_run41519.pdf
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data_loading.pdf
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