Wiki source code of Collection of HDF5 sample data from different beamlines
Version 3.1 by kutnyakd on 2023/10/06 17:37
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1.1 | 1 | |
2 | |||
3 | {{toc/}} | ||
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2.1 | 5 | \\ |
6 | |||
7 | \\ | ||
8 | |||
9 | == how to find the public data in the gamma portal == | ||
10 | |||
11 | \\ | ||
12 | |||
13 | [[image:attach:image2023-9-28_16-42-5.png||height="250"]] | ||
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15 | \\ | ||
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17 | \\ | ||
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1.1 | 19 | == FL21 == |
20 | |||
21 | === **Data: ** === | ||
22 | |||
23 | /asap3/flash/gpfs/fl21/2022/data/11015507/raw/hdf/offline/fl2user2~/~/FLASH2_USER2_stream_2_run41519_file1_20211019T152756.1 | ||
24 | |||
25 | === **analysis file **: === | ||
26 | |||
27 | /asap3/flash/gpfs/fl21/2022/data/11015507/processed/Example_analysis_THz_streaking_run41519.ipynb | ||
28 | |||
29 | {{view-file att--filename="Example_analysis_THz_streaking_run41519.pdf" height="150"/}} | ||
30 | |||
31 | === **description**: === | ||
32 | |||
33 | (% style="color: rgb(51,51,51);" %)Experiment: THz streaking(%%) | ||
34 | (% style="color: rgb(51,51,51);" %)Beamline: FL21(%%) | ||
35 | (% style="color: rgb(51,51,51);" %)Instrument: THz streaking (%%) | ||
36 | (% style="color: rgb(51,51,51);" %)Sample: Neon | ||
37 | |||
38 | The data was taken as part of the THz streaking photon diagnostic shifts. it contains GMD data and Time of Flight data ( recorded with the FLASH GHz ADCs) as well as beam arrival time (BAM) data. | ||
39 | |||
40 | we show how to read and interpolate the GMD data, look at the TOF data and sort a delay scan with the BAM | ||
41 | |||
42 | === **suggested reading:** === | ||
43 | |||
44 | (% style="color: rgb(23,43,77);" %)R. Ivanov, (% class="nowrap" %)I. Bermúdez Macias(%%), (% class="nowrap" %)J. Liu(%%), (% class="nowrap" %)G. Brenner(%%), (% class="nowrap" %)J. Roensch-Schulenburg(%%), (% class="nowrap" %)G. Kurdi(%%), (% class="nowrap" %)U. Fruehling, K, Wenig(%%), (% class="nowrap" %)S Walther(%%), (% class="nowrap" %)A Dimitriou(% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation" %), (% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation nowrap" %)M Drescher(% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation" %), (% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation nowrap" %)I P Sazhina(% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation" %), (% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation nowrap" %)A K Kazansky(% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation" %), (% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation nowrap" %)N M Kabachnik(% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation" %) and (% class="reveal-container reveal-plus-icon reveal-enabled reveal-content reveal-no-animation nowrap" %)S. Düsterer(%%) | ||
45 | (% style="text-align: left;" %)//Single-shot temporal characterization of XUV pulses with duration from ~~10 fs to ~~350 fs at FLASH//__ | ||
46 | __(% style="color: rgb(23,43,77);" %)J. Phys. B: At. Mol. Opt. Phys. (2020)(% style="text-align: left;" %)__ | ||
47 | (% class="Object" %)[[https:~~/~~/doi.org/10.1088/1361-6455/ab9c38>>url:https://doi.org/10.1088/1361-6455/ab9c38||rel="nofollow" shape="rect" class="external-link"]](%%)__ | ||
48 | |||
49 | Dennis Mayer, Fabiano Lever and Markus Gühr, ** ** | ||
50 | //Data analysis procedures for time-resolved x-ray photoelectron spectroscopy at a SASE free-electron-laser, | ||
51 | //Phys. B: At. Mol. Opt. Phys. **55**, 054002 (2022); [[https:~~/~~/doi.org/10.1088/1361-6455/ac3c91>>url:https://doi.org/10.1088/1361-6455/ac3c91||rel="nofollow" shape="rect" class="external-link"]] | ||
52 | |||
53 | \\ | ||
54 | |||
55 | == FL24 == | ||
56 | |||
57 | === **Data: ** === | ||
58 | |||
59 | /asap3/flash/gpfs/fl24/2023/data/11017906/raw/hdf/offline/fl2user1/FLASH2_USER1_stream_2_run43722_file1_20221216T205953.1.h5 | ||
60 | |||
61 | \\ | ||
62 | |||
63 | === **analysis file **: === | ||
64 | |||
65 | /asap3/flash/gpfs/ | ||
66 | |||
67 | === **description**: === | ||
68 | |||
69 | (% style="color: rgb(51,51,51);" %)Experiment: Photoelectron spectroscopy(%%) | ||
70 | (% style="color: rgb(51,51,51);" %)Beamline: FL24(%%) | ||
71 | (% style="color: rgb(51,51,51);" %)Instrument: URSAPQ(%%) | ||
72 | (% style="color: rgb(51,51,51);" %)Sample: ? | ||
73 | |||
74 | === **suggested reading:** === | ||
75 | |||
76 | Jan Metje, Fabiano Lever, Dennis Mayer, Richard James Squibb, Matthew S. Robinson, Mario Niebuhr, Raimund Feifel, Stefan Düsterer, Markus Gühr, | ||
77 | //URSA-PQ: A Mobile and Flexible Pump-Probe Instrument for Gas Phase Samples at the FLASH Free Electron Laser//, | ||
78 | Appl. Sci. **10**, 7882 (2020); [[http:~~/~~/dx.doi.org/10.3390/app10217882>>url:http://dx.doi.org/10.3390/app10217882||style="text-decoration: none;" shape="rect"]] | ||
79 | |||
80 | == PG1 == | ||
81 | |||
82 | === **Data:** === | ||
83 | |||
84 | /asap3/flash/gpfs/pg1/2023/data/11017909/raw/hdf/offline/fl1user3 | ||
85 | |||
86 | (% style="color: rgb(51,51,51);" %)runs 43622 and 43624 (25 GB in total) | ||
87 | |||
88 | === **analysis file **: === | ||
89 | |||
90 | asap3/flash/gpfs/pg1/2023/data/11017909/processed/[[attach:PG1_data_analysis_Si_example_FAB.ipynb]] (version using the new FAB library) | ||
91 | |||
92 | {{view-file att--filename="PG1_data_analysis_Si_example_FAB.pdf" height="150"/}} | ||
93 | |||
94 | asap3/flash/gpfs/pg1/2023/data/11017909/processed/previous_analysis/[[attach:PG1_data_analysis_Si_example.ipynb]] (version using the depreciated flashdaqhdfutils library ) | ||
95 | |||
96 | {{view-file att--filename="PG1_data_analysis_Si_example.pdf" height="150"/}} | ||
97 | |||
98 | === | ||
99 | (% style="color: rgb(51,51,51);" %)** Description:**(%%) === | ||
100 | |||
101 | (% style="color: rgb(51,51,51);" %) Experiment: time-resolved RIXS(%%) | ||
102 | (% style="color: rgb(51,51,51);" %) Beamline: PG1(%%) | ||
103 | (% style="color: rgb(51,51,51);" %) Instrument: TRIXS end station(%%) | ||
104 | (% style="color: rgb(51,51,51);" %) Sample: Si(%%) | ||
105 | \\(% style="color: rgb(51,51,51);" %) Sample was pumped with an optical laser and probed via soft X-ray RIXS by(%%) | ||
106 | (% style="color: rgb(51,51,51);" %) varying the time delay between the optical laser and FEL.(%%) | ||
107 | (% style="color: rgb(51,51,51);" %) Time delay was changed repeatedly from 2935 ps to 2939 ps (these are the delay(%%) | ||
108 | (% style="color: rgb(51,51,51);" %) line encoder values of the optical laser ) in steps of 400fs, 1000 samples per(%%) | ||
109 | (% style="color: rgb(51,51,51);" %) delay step.(%%) | ||
110 | \\(% style="color: rgb(51,51,51);" %) RIXS images were collected via CCD camera (not full chip, only narrow region of(%%) | ||
111 | (% style="color: rgb(51,51,51);" %) interest), operated in long exposure mode of 5 sec (integrating several FEL(%%) | ||
112 | (% style="color: rgb(51,51,51);" %) trains per image).(%%) | ||
113 | \\ | ||
114 | |||
115 | === **suggested reading:** === | ||
116 | |||
117 | S. Dziarzhytski, M. Biednov, B. Dicke, A. Wang, P. S. Miedema, R. Y. Engel, J. O. Schunck, H. Redlin, H. Weigelt, F. Siewert, C. Behrens, M. Sinha, A. Schulte, B. Grimm-Lebsanft, S. G. Chiuzbăian, W. Wurth, M. Beye, M. Rübhausen, and G. Brenner, | ||
118 | //The TRIXS end-station for femtosecond time-resolved resonant inelastic x-ray scattering experiments at the soft x-ray free-electron laser FLASH//, | ||
119 | Struct. Dyn. **7**, 054301 (2020); [[https:~~/~~/doi.org/10.1063/4.0000029>>url:https://doi.org/10.1063/4.0000029||style="text-decoration: none;" shape="rect"]] | ||
120 | |||
121 | \\ | ||
122 | |||
123 | \\ | ||
124 | |||
125 | == PG2 / HEXTOF == | ||
126 | |||
127 | === **Data:** === | ||
128 | |||
129 | /asap3/flash/gpfs/pg2/2023/data/11019101/raw/hdf/offline/fl1user3/ | ||
130 | |||
131 | Runs: | ||
132 | |||
133 | * 44762 - chessy sample for PEEM mode calibration | ||
134 | * 44797 - energy calibration | ||
135 | * 44798 and 44799 - optical spot profile | ||
136 | * 44824, 44825, 44826 and 44827 - trMM data | ||
137 | |||
138 | (% style="color: rgb(51,51,51);" %)(3.5 GB in total) | ||
139 | |||
140 | === **analysis file **: === | ||
141 | |||
142 | /asap3/flash/gpfs/pg2/2023/data/11019101/processed/... | ||
143 | |||
144 | === | ||
145 | (% style="color: rgb(51,51,51);" %)** Description:**(%%) === | ||
146 | |||
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3.1 | 147 | (% style="color: rgb(51,51,51);" %) Experiment: time-resolved momentum microscopy(%%) |
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1.1 | 148 | (% style="color: rgb(51,51,51);" %) Beamline: PG2(%%) |
149 | (% style="color: rgb(51,51,51);" %) Instrument: HEXTOF(%%) | ||
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3.1 | 150 | (% style="color: rgb(51,51,51);" %) Samples: Chessy and Gd/W(110)(%%) |
151 | \\ | ||
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1.1 | 152 | |
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3.1 | 153 | Run 44762 was measured with a Hg lamp on the test "Chessy" sample to calibrate FoV in µm in the PEEM mode. |
154 | |||
155 | Runs 44798 and 44799 - optical spot profile measured in PEEM mode under the same settings as run 44762 | ||
156 | with two different attenuations of the pump laser to determine the spot size of the pump laser. | ||
157 | This is needed to estimate pump fluence during trMM runs (44824, 44825, 44826 and 44827) using values | ||
158 | of I,,0,, monitor of the pump laser. | ||
159 | |||
160 | Runs 44797 - measured with 36.2 eV in k-mode with manually variable sample bias from 28 to 32V by 1 V | ||
161 | every 2000 shots to calibrate the energy scale. | ||
162 | This energy calibration has to be used for trMM data. | ||
163 | |||
164 | Runs 44824, 44825, 44826 and 44827 were measured (% style="color: rgb(51,51,51);" %)from Gd/W(110) sample which was pumped with | ||
165 | a 1030 nm s-polarized optical laser and probed with 36.2 eV for time-resolved momentum microscopy (trARPES) | ||
166 | varying the time delay between the optical laser and FEL. The time delay was changed in ZigZag manner repeatedly | ||
167 | from 1462.00 ps to 1464.85 ps with 200 steps and 1 sec waiting time at each step. | ||
168 | |||
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1.1 | 169 | === **suggested reading:** === |
170 | |||
171 | 1. D. Kutnyakhov, R.P. Xian, M. Dendzik, M. Heber, F. Pressacco, S.Y. Agustsson, L. Wenthaus, H. Meyer, S. Gieschen, G. Mercurio, A. Benz, K. Bühlman, S. Däster, R. Gort, D. Curcio, K. Volckaert, M. Bianchi, Ch. Sanders, J A. Miwa, S. Ulstrup, A. Oelsner, C. Tusche, Y.-J. Chen, D. Vasilyev, K. Medjanik, G. Brenner, S. Dziarzhytski, H. Redlin, B. Manschwetus, S. Dong, J. Hauer, L. Rettig, F. Diekmann, K. Rossnagel, J. Demsar, H.-J. Elmers, Ph. Hofmann, R. Ernstorfer, G. Schönhense, Y. Acremann, and W. Wurth, | ||
172 | //Time- and momentum-resolved photoemission studies using time-of-flight momentum microscopy at a free-electron laser//, | ||
173 | Rev. Sci. Instrum. **91**, 013109 (2020); | ||
174 | [[https:~~/~~/doi.org/10.1063/1.5118777>>url:https://doi.org/10.1063/1.5118777||rel="nofollow" shape="rect" class="external-link"]] | ||
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3.1 | 175 | 1. Single Event Data Frame Processor used as a backend to handle photoelectron resolved datastreams |
176 | [[https:~~/~~/github.com/OpenCOMPES/sed>>url:https://github.com/OpenCOMPES/sed||shape="rect"]] | ||
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1.1 | 177 | |
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