Changes for page The FLASH HDF5 structure

Last modified by sndueste on 2025/02/06 10:55

From 20.1 to 21.1 From 27.1 to 28.1

From version 21.1

edited by sndueste
on 2019/09/18 10:29

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To version 27.1

edited by sndueste
on 2019/10/21 17:34

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@@ -36,6 +36,30 @@
  \\
++== HDF5 example files ==
++
++Here we have a few HDF5 samples (User data combined with Photon diagnostics data) from a few beamtimes showing the different kind options.
++
++Example 1:  Images saved at FLASH2
++
++\\
++
++[[image:attach:image2019-10-21_17-2-50.png||thumbnail="true" height="150"]]
++
++[[download HDF5>>url:https://desycloud.desy.de/index.php/s/nyEgeCWJFC4gao2||shape="rect"]]
++
++\\
++
++\\
++
++\\
++
++[[Contents>>doc:||anchor="Contents"]]
++
++\\
++
++\\
++
  == Most popular FLASH parameters and their names in HDF5, DOOCS and (raw) DAQ ==
  The complete list for the relation between DOOCS names and HDF5 names for the recordable parameters can be found in [[DESY's Repository~[~[image:url:http://hasfweb.desy.de/pub/TWiki/TWikiDocGraphics/external-link.gif~|~|width="13" height="12"~]~]>>url:https://stash.desy.de/projects/CS/repos/pah/browse/src/camp/data/channel2HdfName.dat||shape="rect"]].
@@ -79,7 +79,7 @@
  //always saved (PBD)//
  DOOCS prop : {{code language="none"}}TTF2.FEL/BLFILTERS1/FILTER1/FW.MOTOR.POS{{/code}}
  DAQ channel: {{code language="none"}}TTF2.FEL/BLFILTERS1/FILTER1/FW.MOTOR.POS{{/code}}
--desc: Position of the BL filter wheel 1 - to correlate with the filter material please look [[here>>doc:FLASH.Filter history (BL filterwheel 12)]]
++desc: Position of the BL filter wheel 1 - to correlate with the filter material please look [[here>>doc:FLASHUSER.jddd-linked help pages.Filter-Units.Filter wheels in FLASH1 and FLASH2.WebHome]]
  units: degree
  \\
@@ -87,7 +87,7 @@
  //always saved (PBD)//
  DOOCS prop : {{code language="none"}}TTF2.FEL/BLFILTERS2/FILTER2/FW.MOTOR.POS{{/code}}
  DAQ channel: {{code language="none"}}TTF2.FEL/BLFILTERS2/FILTER2/FW.MOTOR.POS{{/code}}
--desc: Position of the BL filter wheel 2 - to correlate with the filter material please look [[here>>doc:FLASH.Filter history (BL filterwheel 12)]]
++desc: Position of the BL filter wheel 2 - to correlate with the filter material please look [[here>>doc:FLASHUSER.jddd-linked help pages.Filter-Units.Filter wheels in FLASH1 and FLASH2.WebHome]]
  units: degree
  \\
@@ -137,7 +137,7 @@
  DOOCS prop : {{code language="none"}}TTF2.DAQ/PHFLUX/OUT34/VAL{{/code}}
  DAQ channel: {{code language="none"}}PBD.PHFLUX/TUNNEL.ENERGYPULSE.USER{{/code}}
  desc :Energy per pulse Tunnel (from e-) - the values are set to "0" if there was no SASE beam in the FEL
--units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision) **[[see here for help>>doc:FLASH.Calibrating the pulse resolved (electron) data from GMD]]**
++units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision) **[[see here for help>>doc:FLASHUSER.jddd-linked help pages.Calibrating the pulse resolved (electron) data from GMD.WebHome]]**
  {{code language="none"}}/FL1/Photon Diagnostic/GMD/Pulse resolved energy/energy tunnel (raw){{/code}}
  //always saved (PBD)//
@@ -144,7 +144,7 @@
  DOOCS prop : {{code language="none"}}TTF2.DAQ/PHFLUX/OUT14/VAL{{/code}}
  DAQ channel: {{code language="none"}}PBD.PHFLUX/TUNNEL.ENERGYPULSE.FF{{/code}}
  desc :Energy per pulse Tunnel (from e-) - uncorrected values. There are also values saved if there was no beam ... just background noise
--units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision) **[[see here for help>>doc:FLASH.Calibrating the pulse resolved (electron) data from GMD]]**
++units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision) **[[see here for help>>doc:FLASHUSER.jddd-linked help pages.Calibrating the pulse resolved (electron) data from GMD.WebHome]]**
  {{code language="none"}}/FL1/Photon Diagnostic/GMD/Average energy/energy BDA{{/code}}
  //always saved (PBD)//
@@ -158,7 +158,7 @@
  DOOCS prop : {{code language="none"}}TTF2.DAQ/PHFLUX/OUT35/VAL{{/code}}
  DAQ channel: {{code language="none"}}PBD.PHFLUX/BDA.ENERGYPULSE.USER{{/code}}
  desc :Energy per pulse BDA (from e-) - the values are set to "0" if there was no SASE beam in the FEL
--units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision) **[[see here for help>>doc:FLASH.Calibrating the pulse resolved (electron) data from GMD]]**
++units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision) **[[see here for help>>doc:FLASHUSER.jddd-linked help pages.Calibrating the pulse resolved (electron) data from GMD.WebHome]]**
  {{code language="none"}}/FL1/Photon Diagnostic/GMD/Pulse resolved energy/energy BDA (raw){{/code}}
  //always saved (PBD)//
@@ -165,7 +165,7 @@
  DOOCS prop : {{code language="none"}}TTF2.DAQ/PHFLUX/OUT15/VAL{{/code}}
  DAQ channel: {{code language="none"}}PBD.PHFLUX/BDA.ENERGYPULSE.FF{{/code}}
  desc :Energy per pulse BDA (from e-) - uncorrected values. There are also values saved if there was no beam ... just background noise
--units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision)** [[see here for help>>doc:FLASH.Calibrating the pulse resolved (electron) data from GMD]]**
++units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision)** [[see here for help>>doc:FLASHUSER.jddd-linked help pages.Calibrating the pulse resolved (electron) data from GMD.WebHome]]**
  {{code language="none"}}/FL1/Photon Diagnostic/GMD/Beam position/position BDA horizontal{{/code}}
  //always saved (PBD)//
@@ -280,7 +280,7 @@
  DAQ channel: {{code language="none"}}FLASH.SDIAG/BAM.DAQ/4DBC3.LOW_CHARGE_ARRIVAL_TIME{{/code}}
  desc: Electron bunch arrival time measured with the BAM (more or less) before the undulator (pulse resolved data)
  units: ps (bigger numbers indicate later arrivaltime of the electrons)
--note: besides the arivaltime from FLASH1 there is also the FLASH2/3 electron arrival time saved. [[LINK to detailled infos from MSK (may only work inside DESY network~[~[image:url:http://hasfweb.desy.de/pub/TWiki/TWikiDocGraphics/external-link.gif~|~|width="13" height="12"~]~]>>url:http://www.desy.de/~~mbock/pages/BAM_daq_channel_descriptions.html||shape="rect"]] and to a recent  [[talk about the working principle of the BAM>>url:https://confluence.desy.de/download/attachments/134216957/BAM-basics_and_outlook-2018_DESY-template_16-9Format.pdf?version=1&modificationDate=1565162143328&api=v2||shape="rect"]]
++note: besides the arivaltime from FLASH1 there is also the FLASH2/3 electron arrival time saved. [[LINK to detailled infos from MSK (may only work inside DESY network~[~[image:url:http://hasfweb.desy.de/pub/TWiki/TWikiDocGraphics/external-link.gif~|~|width="13" height="12"~]~]>>url:http://www.desy.de/~~mbock/pages/BAM_daq_channel_descriptions.html||shape="rect"]] and to a recent  [[talk about the working principle of the BAM>>attach:BAM-basics and outlook-2018_DESY-template_16-9Format.pdf]]
  ===== electron beam profile =====
@@ -541,13 +541,13 @@
  //always saved (PBD2)//
  DOOCS prop : {{code language="none"}}FLASH.FEL/FL20H.PH.MOTOR/MOTOR1.MOT3/FPOS{{/code}}
  DAQ channel: FLASH.FEL/FL20H.PH.MOTOR/MOTOR1.MOT3/FPOS
--desc: Position of the BL filter wheel 1 - to correlate with the filter material please look **[[here>>doc:FLASH.Filter history (BL filterwheel 12)]]**
++desc: Position of the BL filter wheel 1 - to correlate with the filter material please look **[[here>>doc:FLASHUSER.jddd-linked help pages.Filter-Units.Filter wheels in FLASH1 and FLASH2.WebHome]]**
  units: degree
  \\
  //always saved (PBD2)//
--\\\\**[[here>>doc:FLASH.Filter history (BL filterwheel 12)]]**
++\\\\**[[here>>doc:FLASHUSER.jddd-linked help pages.Filter-Units.Filter wheels in FLASH1 and FLASH2.WebHome]]**
  {{code language="none"}}/FL2/Beamlines/Filter wheel/position wheel 2  DOOCS prop : FLASH.FEL/FL20H.PH.MOTOR/MOTOR2.MOT3/FPOS DAQ channel: FLASH.FEL/FL20H.PH.MOTOR/MOTOR2.MOT3/FPOS desc: Position of the BL filter wheel 2 - to correlate with the filter material please look units: degree{{/code}}
  \\
@@ -589,7 +589,7 @@
  DOOCS prop : {{code language="none"}}FLASH.FEL/XGM.INTENSITY/FL2.TUNNEL/INTENSITY.TD{{/code}}
  DAQ channel: {{code language="none"}}FLASH.FEL/XGM.INTENSITY/FL2.TUNNEL/INTENSITY.TD{{/code}}
  desc : Energy per pulse measured in the Tunnel  (in fromt of the gas attenuator and the apertures in the Hall)
--units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision)** [[see here for help>>doc:FLASH.Calibrating the pulse resolved (electron) data from GMD]]**
++units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision)** [[see here for help>>doc:FLASHUSER.jddd-linked help pages.Calibrating the pulse resolved (electron) data from GMD.WebHome]]**
  \\
@@ -733,7 +733,7 @@
  The BAM measures the arrivaltime of** FLASH 1 and FLASH2** in the same data set (thus also sorted in at /FL1/ !). The first values are for FLASH1 bunches.
  After a gap of about 70 micros ( 70 colums)  with  as entry for the switching between FLASH 1 and 2 the values for the electrons used in FLASH2 start.  The start time of FLASH2 is also recorded in the DAQ. FLASH1 start time is for historic reasons 700. thus if e.g. the start time of FLASH2 ( property name see below) is 1200 it means that FLASH starts at column 500 (1200-700) ...
--Docu for BAM:  [[LINK to detailled infos from MSK (may only work inside DESY network~[~[image:url:http://hasfweb.desy.de/pub/TWiki/TWikiDocGraphics/external-link.gif~|~|width="13" height="12"~]~]>>url:http://www.desy.de/~~mbock/pages/BAM_daq_channel_descriptions.html||shape="rect"]] and to a recent  [[talk about the working principle of the BAM>>url:https://confluence.desy.de/download/attachments/134216957/BAM-basics_and_outlook-2018_DESY-template_16-9Format.pdf?version=1&modificationDate=1565162143328&api=v2||shape="rect"]]
++Docu for BAM:  [[LINK to detailled infos from MSK (may only work inside DESY network~[~[image:url:http://hasfweb.desy.de/pub/TWiki/TWikiDocGraphics/external-link.gif~|~|width="13" height="12"~]~]>>url:http://www.desy.de/~~mbock/pages/BAM_daq_channel_descriptions.html||shape="rect"]] and to a recent [[talk about the working principle of the BAM>>attach:BAM-basics and outlook-2018_DESY-template_16-9Format.pdf]]
  [[Contents>>doc:||anchor="Contents"]]
@@ -863,7 +863,7 @@
  There may be more information available from the "Laser DAQ". laese contact your Laser Local Contact.
--{{code language="none"}}/FL2/Experiment/Pump probe laser/FL24/laser attenuation{{/code}}//always saved (PBD2)//
++{{code language="none"}}/FL2/Experiment/Pump probe laser/FL24/attenuator position{{/code}}//always saved (PBD2)//
  DOOCS prop : {{code language="none"}}FLASH.FEL/FLAPP2BEAMLINES/MOTOR1.FL24/FPOS{{/code}}
  DAQ channel: {{code language="none"}}FLASH.FEL/FLAPP2BEAMLINES/MOTOR1.FL24/FPOS{{/code}}
  desc: attenuation of the PPLaser in the FL24 hutch (rotation of a waveplate)
@@ -872,9 +872,9 @@
  \\
--{{code language="none"}}/FL2/Experiment/Pump probe laser/FL24/laser polarization{{/code}}//always saved (PBD2)//
--DOOCS prop : {{code language="none"}}FLASH.FEL/FLAPP2BEAMLINES/MOTOR1.FL24/FPOS{{/code}}
--DAQ channel: {{code language="none"}}FLASH.FEL/FLAPP2BEAMLINES/MOTOR1.FL24/FPOS{{/code}}
++{{code language="none"}}/FL2/Experiment/Pump probe laser/FL24/polarization position{{/code}}//always saved (PBD2)//
++DOOCS prop : {{code language="none"}}FLASH.FEL/FLAPP2BEAMLINES/MOTOR2.FL24/FPOS{{/code}}
++DAQ channel: {{code language="none"}}FLASH.FEL/FLAPP2BEAMLINES/MOTOR2.FL24/FPOS{{/code}}
  desc: attenuation of the PPLaser in the FL24 hutch (rotation of a waveplate)
  units : deg.
@@ -889,225 +889,23 @@
  \\
--\\
--
--{{code language="none"}}/FL1/Experiment/Pump probe laser/Synchronization/timing jitter RMS GECCO{{/code}}
++{{code language="none"}}/FL1/Experiment/Pump probe laser/Synchronization/timing jitter RMS{{/code}}
  //always saved (PBD)//
--DOOCS prop : {{code language="none"}}FLASH.SYNC/F1PPL.LASER_LOCK/28C.F1PPL1.CONTROLLER/ADV_CTRL_MANAGER.0.PID_INPUT_JITTER.2.RD{{/code}}
--DAQ channel: {{code language="none"}}FLASH.SYNC/F1PPL.LASER_LOCK/28C.F1PPL1.CONTROLLER/ADV_CTRL_MANAGER.0.PID_INPUT_JITTER.2.RD{{/code}}
--desc: rms jitter of the GECCO (% class="twikiNewLink" %)TiSa(%%) Oscillator units: fs
++DOOCS prop : {{code language="none"}}FLASH.SYNC/LASER.LOCK.EXP/FLASH2.PPL1.OSC1/CURRENT_INPUT_JITTER.RD{{/code}}
++DAQ channel: {{code language="none"}}FLASH.SYNC/LASER.LOCK.EXP/FLASH2.PPL1.OSC1/CURRENT_INPUT_JITTER.RD{{/code}}
++desc: rms jitter of the fs-Oscillator
++units: fs
--\\
--
--{{code language="none"}}/FL1/Experiment/Pump probe laser/streak camera delay time{{/code}}
--//always saved (PBD)//
--DOOCS prop : {{code language="none"}}TTF2.FEL/TDOLFEL/TDOLFEL/STREAK.CAM.TIME{{/code}}
--DOOCS prop : {{code language="none"}}TTF2.FEL/TDOLFEL/TDOLFEL/STREAK.CAM.TIME{{/code}}
--desc: delaytime between the optical laser and the FEL units: ps
--
--\\
--
  [[Contents>>doc:||anchor="Contents"]]
  \\
--\\
++=== "/uncategorized/" ===
--\\
++ If parameters for an experiment are included on short notice the correct naming in the HDF5 may not be in time and the data will show up in /uncategorized/ with their DOOCS names
  \\
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--|(((
--FLASH.SYNC/LASER.LOCK.EXP/FLASH2.PPL1.OSC1/CURRENT_INPUT_JITTER.RD
--)))|(((
--/FL2/Experiment/Pump probe laser/Synchronization/timing jitter RMS
--)))
--|(((
--FLASH.SYNC/LASER.LOCK.EXP/FLASH2.PPL1.OSC1/LOCK_STATUS.VALUE.RD
--)))|(((
--/FL2/Experiment/Pump probe laser/Synchronization/timing jitter RMS GECCO
--)))
--|(((
--FLASH.SYNC/LASER.LOCK.EXP/FLASH2.PPL1.OSC1/FMC0.MD22.0.POSITION.RD
--)))|(((
--/FL2/Experiment/Pump probe laser/laser delay readback
--)))
--|(((
--FLASH.SYNC/LASER.LOCK.EXP/FLASH2.PPL1.OSC1/FMC0.MD22.0.POSITION_SET.WR
--)))|(((
--/FL2/Experiment/Pump probe laser/laser delay set value
--)))
--|(((
--FLASH.FEL/FLAPP2BEAMLINES/MOTOR1.FL24/FPOS
--)))|(((
--/FL2/Experiment/Pump probe laser/FL24/attenuator position
--)))
--|(((
--FLASH.FEL/FLAPP2BEAMLINES/MOTOR2.FL24/POS
--)))|(((
--/FL2/Experiment/Pump probe laser/FL24/polarization position
--)))
--
--\\
--
--[[Contents>>doc:||anchor="Contents"]]
--
  === HDF5 structure revisions ===
  Starting with Beamblock 4, August 2018, the hierarchy of the HDF group names have been adapted to reflect the new situation at FLASH. FLASH2 is operating for users quite some time now. Therefore, both accelerators appear equally in their respective HDF groups, namely "/FL1" and "/FL2". The root group of proper, by run organised HDF files have an attribute called "version". This version attribute has changed from "0.2.x" to "0.3.x". The changes in detail:

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