Changes for page The FLASH HDF5 structure

Last modified by sndueste on 2025/02/06 10:55

From 2.1 to 3.1 From 4.1 to 5.1

From version 3.1

edited by sndueste
on 2019/08/06 15:06

Change comment: There is no comment for this version

To version 4.1

edited by sendels
on 2019/08/09 12:45

Change comment: added links

Raw
Rendered

Summary

Page properties (2 modified, 0 added, 0 removed)

Details

Page properties

Author

@@ -1,1 +1,1 @@
--XWiki.sndueste
++XWiki.sendels

Content

@@ -2,22 +2,22 @@
  \\
--* General information about HDF5
--* FLASH HDF5 structure
--* Most popular FLASH parameters and their names in HDF5
--** FLASH1
--*** Beamline info (FLASH1)
--*** Photon Diagnostics: SASE / Spectrometer (FLASH1)
--*** Electron Beam properties (FLASH1)
--*** Timing information, rep rate etc.(FLASH1)
--*** Pump Probe Laser (FLASH1)
--*** User Data (FLASH1)
--** FLASH2
--** HDF5 structure revisions
--* Example code showing how to access HDF5 files
--** Samples how to read HDF5 with Matlab
--** How to read HDF5 with Python via FLASHH5
--* HDF5 and DOOCS
++* [[General information about HDF5>>doc:||anchor="General information about HDF5"]]
++* [[FLASH HDF5 structure>>doc:||anchor="FLASH HDF5 structure"]]
++* [[Most popular FLASH parameters and their names in HDF5>>doc:||anchor="Most popular FLASH parameters and their names in HDF5"]]
++** [[FLASH1>>doc:||anchor="FLASH1"]]
++*** [[Beamline info (FLASH1)>>doc:||anchor="Beamline info (FLASH1)"]]
++*** [[Photon Diagnostics SASE / Spectrometer (FLASH1)>>doc:||anchor="Photon Diagnostics SASE / Spectrometer (FLASH1)"]]
++*** [[Electron Beam properties (FLASH1)>>doc:||anchor="Electron Beam properties (FLASH1)"]]
++*** [[Timing information, rep rate etc.(FLASH1)>>doc:||anchor="Timing information, rep rate etc.(FLASH1)"]]
++*** [[Pump Probe Laser (FLASH1)>>doc:||anchor="Pump Probe Laser (FLASH1)"]]
++*** [[User Data (FLASH1)>>doc:||anchor="User Data (FLASH1)"]]
++** [[FLASH2>>doc:||anchor="FLASH2"]]
++** [[HDF5 structure revisions>>doc:||anchor="HDF5 structure revisions"]]
++* [[Example code showing how to access HDF5 files>>doc:||anchor="Example code showing how to access HDF5 files"]]
++** [[Samples how to read HDF5 with Matlab>>doc:||anchor="Samples how to read HDF5 with Matlab"]]
++** [[How to read HDF5 with Python via FLASHH5>>doc:||anchor="How to read HDF5 with Python via FLASHH5"]]
++* [[HDF5 and DOOCS>>doc:||anchor="HDF5 and DOOCS"]]
  \\
@@ -33,7 +33,7 @@
  {{code language="none"}}> module load xray{{/code}}
  {{code language="none"}}> hdfview{{/code}}
--\\
++[[Contents>>doc:||anchor="Contents"]]
  == FLASH HDF5 structure ==
@@ -44,12 +44,12 @@
  * Beamlines
  * Experiment
  * Timing
--[[image:url:http://hasfweb.desy.de/pub/Setup/HDF5main/HDF5_structure.jpg||alt="HDF5_structure.jpg" width="700" height="500"]]
++[[~[~[image:url:http://hasfweb.desy.de/pub/Setup/HDF5main/HDF5_structure.jpg~|~|alt="HDF5_structure.jpg" width="700" height="500"~]~]>>attach:HDF5_structure.jpg]]
  A detailled description of (most) channels can be found in the lower part of the hdf5 viewer:
--[[image:url:http://hasfweb.desy.de/pub/Setup/HDF5main/HDF5_structure_desc.jpg||alt="HDF5_structure_desc.jpg" width="341" height="413"]]
++[[~[~[image:url:http://hasfweb.desy.de/pub/Setup/HDF5main/HDF5_structure_desc.jpg~|~|alt="HDF5_structure_desc.jpg" width="341" height="413"~]~]>>attach:HDF5_structure_desc.jpg]]
--\\
++[[Contents>>doc:||anchor="Contents"]]
  \\
@@ -96,7 +96,7 @@
  //always saved (PBD)//
  DOOCS prop : {{code language="none"}}TTF2.FEL/BLFILTERS1/FILTER1/FW.MOTOR.POS{{/code}}
  DAQ channel: {{code language="none"}}TTF2.FEL/BLFILTERS1/FILTER1/FW.MOTOR.POS{{/code}}
--desc: Position of the BL filterwheel 1 - to correlate with the filter material please look [[here>>doc:FLASHUSER.Filter history (BL filterwheel 12)]]
++desc: Position of the BL filterwheel 1 - to correlate with the filter material please look [[here>>doc:FLASH.Filter history (BL filterwheel 12)]]
  units: degree
  \\
@@ -104,7 +104,7 @@
  //always saved (PBD)//
  DOOCS prop : {{code language="none"}}TTF2.FEL/BLFILTERS2/FILTER2/FW.MOTOR.POS{{/code}}
  DAQ channel: {{code language="none"}}TTF2.FEL/BLFILTERS2/FILTER2/FW.MOTOR.POS{{/code}}
--desc: Position of the BL filterwheel 2 - to correlate with the filter material please look [[here>>doc:FLASHUSER.Filter history (BL filterwheel 12)]]
++desc: Position of the BL filterwheel 2 - to correlate with the filter material please look [[here>>doc:FLASH.Filter history (BL filterwheel 12)]]
  units: degree
  \\
@@ -132,9 +132,9 @@
  units: degree
  \\
--\\
++[[Contents>>doc:||anchor="Contents"]]
--==== Photon Diagnostics: SASE / Spectrometer (FLASH1) ====
++==== Photon Diagnostics SASE / Spectrometer (FLASH1) ====
  {{code language="none"}}/FL1/Photon Diagnostic/GMD/Average energy/energy tunnel{{/code}}
  //always saved (PBD)//
@@ -148,7 +148,7 @@
  DOOCS prop : {{code language="none"}}TTF2.DAQ/PHFLUX/OUT34/VAL{{/code}}
  DAQ channel: {{code language="none"}}PBD.PHFLUX/TUNNEL.ENERGYPULSE.USER{{/code}}
  desc :Energy per pulse Tunnel (from e-) - the values are set to "0" if there was no SASE beam in the FEL
--units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision) [[see here for help>>doc:FLASHUSER.jddd-linked help pages.Calibrating the pulse resolved (electron) data from GMD.WebHome]]
++units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision) [[see here for help>>doc:FLASH.Calibrating the pulse resolved (electron) data from GMD]]
  {{code language="none"}}/FL1/Photon Diagnostic/GMD/Pulse resolved energy/energy tunnel (raw){{/code}}
  //always saved (PBD)//
@@ -155,7 +155,7 @@
  DOOCS prop : {{code language="none"}}TTF2.DAQ/PHFLUX/OUT14/VAL{{/code}}
  DAQ channel: {{code language="none"}}PBD.PHFLUX/TUNNEL.ENERGYPULSE.FF{{/code}}
  desc :Energy per pulse Tunnel (from e-) - uncorrected values. There are also values saved if there was no beam ... just background noise
--units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision) [[see here for help>>doc:FLASHUSER.jddd-linked help pages.Calibrating the pulse resolved (electron) data from GMD.WebHome]]
++units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision) [[see here for help>>doc:FLASH.Calibrating the pulse resolved (electron) data from GMD]]
  {{code language="none"}}/FL1/Photon Diagnostic/GMD/Average energy/energy BDA{{/code}}
  //always saved (PBD)//
@@ -169,7 +169,7 @@
  DOOCS prop : {{code language="none"}}TTF2.DAQ/PHFLUX/OUT35/VAL{{/code}}
  DAQ channel: {{code language="none"}}PBD.PHFLUX/BDA.ENERGYPULSE.USER{{/code}}
  desc :Energy per pulse BDA (from e-) - the values are set to "0" if there was no SASE beam in the FEL
--units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision) [[see here for help>>doc:FLASHUSER.jddd-linked help pages.Calibrating the pulse resolved (electron) data from GMD.WebHome]]
++units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision) [[see here for help>>doc:FLASH.Calibrating the pulse resolved (electron) data from GMD]]
  {{code language="none"}}/FL1/Photon Diagnostic/GMD/Pulse resolved energy/energy BDA (raw){{/code}}
  //always saved (PBD)//
@@ -176,13 +176,13 @@
  DOOCS prop : {{code language="none"}}TTF2.DAQ/PHFLUX/OUT15/VAL{{/code}}
  DAQ channel: {{code language="none"}}PBD.PHFLUX/BDA.ENERGYPULSE.FF{{/code}}
  desc :Energy per pulse BDA (from e-) - uncorrected values. There are also values saved if there was no beam ... just background noise
--units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision) [[see here for help>>doc:FLASHUSER.jddd-linked help pages.Calibrating the pulse resolved (electron) data from GMD.WebHome]]
++units : a.u. (more or less µJ but need to be calibrated with the "Average energy" for good precision) [[see here for help>>doc:FLASH.Calibrating the pulse resolved (electron) data from GMD]]
  {{code language="none"}}/FL1/Photon Diagnostic/GMD/Beam position/position BDA horizontal{{/code}}
  //always saved (PBD)//
  DOOCS prop : {{code language="none"}}FLASH.FEL/XGM.POSMON/FL1.BDA/IX.POS{{/code}}
  DAQ channel: {{code language="none"}}FLASH.FEL/XGM.POSMON/FL1.BDA/IX.POS{{/code}}
--desc :Beam position of the photon Beam determined by the [[GMD>>doc:FLASHUSER.Gas Monitor Detector]] (BDA, x=horizontal)
++desc :Beam position of the photon Beam determined by the [[GMD>>doc:FLASH.Gas Monitor Detector]] (BDA, x=horizontal)
  units : mm
  {{code language="none"}}/FL1/Photon Diagnostic/GMD/Beam position/position BDA vertical{{/code}}
@@ -189,7 +189,7 @@
  //always saved (PBD)//
  DOOCS prop : {{code language="none"}}FLASH.FEL/XGM.POSMON/FL1.BDA/IY.POS{{/code}}
  DAQ channel: {{code language="none"}}FLASH.FEL/XGM.POSMON/FL1.BDA/IY.POS{{/code}}
--desc :Beam position of the photon Beam determined by the [[GMD>>doc:FLASHUSER.Gas Monitor Detector]] (BDA, y=vertical)
++desc :Beam position of the photon Beam determined by the [[GMD>>doc:FLASH.Gas Monitor Detector]] (BDA, y=vertical)
  units : mm
  {{code language="none"}}/FL1/Photon Diagnostic/GMD/Beam position/position tunnel horizontal{{/code}}
@@ -196,7 +196,7 @@
  //always saved (PBD)//
  DOOCS prop : {{code language="none"}}FLASH.FEL/XGM.POSMON/FL1.TUNNEL/IX.POS{{/code}}
  DAQ channel: {{code language="none"}}FLASH.FEL/XGM.POSMON/FL1.TUNNEL/IX.POS{{/code}}
--desc :Beam position of the photon Beam determined by the [[GMD>>doc:FLASHUSER.Gas Monitor Detector]] (TUNNEL, x=horizontal)
++desc :Beam position of the photon Beam determined by the [[GMD>>doc:FLASH.Gas Monitor Detector]] (TUNNEL, x=horizontal)
  units : mm
  {{code language="none"}}/FL1/Photon Diagnostic/GMD/Beam position/position tunnel vertical{{/code}}
@@ -203,7 +203,7 @@
  //always saved (PBD)//
  DOOCS prop : {{code language="none"}}FLASH.FEL/XGM.POSMON/FL1.TUNNEL/IY.POS{{/code}}
  DAQ channel: {{code language="none"}}FLASH.FEL/XGM.POSMON/FL1.TUNNEL/IY.POS{{/code}}
--desc :Beam position of the photon Beam determined by the [[GMD>>doc:FLASHUSER.Gas Monitor Detector]] (TUNNEL, y=vertical)
++desc :Beam position of the photon Beam determined by the [[GMD>>doc:FLASH.Gas Monitor Detector]] (TUNNEL, y=vertical)
  units : mm
  {{code language="none"}}/FL1/Photon Diagnostic/Wavelength/Tunnelspectrometer/wavelength{{/code}}
@@ -269,7 +269,7 @@
  desc : increment value (in nm) for each pixel for the wavelength axis of the XUV Spectrum measured with the "PG spectrometer"
  units : nm
--\\
++[[Contents>>doc:||anchor="Contents"]]
  ==== Electron Beam properties (FLASH1) ====
@@ -355,7 +355,7 @@
  units: nm
  \\
--\\
++[[Contents>>doc:||anchor="Contents"]]
  \\
@@ -436,7 +436,7 @@
  third column: Train ID of FLASH
  \\
--\\
++[[Contents>>doc:||anchor="Contents"]]
  \\
@@ -478,7 +478,7 @@
  \\
--\\
++[[Contents>>doc:||anchor="Contents"]]
  \\
@@ -528,7 +528,7 @@
  \\
--\\
++[[Contents>>doc:||anchor="Contents"]]
  === FLASH2 ===
@@ -536,9 +536,9 @@
  (% class="wrapped" %)
  |=(((
--[[DAQ name>>url:http://hasfweb.desy.de/bin/view/Setup/HDF5main?sortcol=0;table=1;up=0#sorted_table||title="Sort by this column" rel="nofollow" shape="rect"]]
++DAQ name
  )))|=(((
--[[HDF5 name>>url:http://hasfweb.desy.de/bin/view/Setup/HDF5main?sortcol=1;table=1;up=0#sorted_table||title="Sort by this column" rel="nofollow" shape="rect"]]
++HDF5 name
  )))
  |(((
  FLASH.UTIL/FL2.UND.MOTOR/FL2SASE3/GAP
@@ -723,7 +723,7 @@
  \\
--\\
++[[Contents>>doc:||anchor="Contents"]]
  === HDF5 structure revisions ===
@@ -739,9 +739,9 @@
  (% class="wrapped" %)
  |=(((
--[[earlier HDF path (vers. 0.2)>>url:http://hasfweb.desy.de/bin/view/Setup/HDF5main?sortcol=0;table=2;up=0#sorted_table||title="Sort by this column" rel="nofollow" shape="rect"]]
++earlier HDF path (vers. 0.2)
  )))|=(((
--[[is now (vers. 0.3)>>url:http://hasfweb.desy.de/bin/view/Setup/HDF5main?sortcol=1;table=2;up=0#sorted_table||title="Sort by this column" rel="nofollow" shape="rect"]]
++is now (vers. 0.3)
  )))
  |(((
  /Photon Diagnostic/GMD/Beam position/position BDA x
@@ -836,7 +836,7 @@
  \\
--\\
++[[Contents>>doc:||anchor="Contents"]]
  \\
@@ -895,7 +895,7 @@
  GMD_Spectrum=h5read(hdf5file,'/Photon Diagnostic/GMD/Pulse resolved energy/energy BDA',[1 Start_event],[40 Number_of_events] );
  )))
--\\
++[[Contents>>doc:||anchor="Contents"]]
  === How to read HDF5 with Python via FLASHH5 ===
@@ -906,3 +906,5 @@
  == HDF5 and DOOCS ==
  Here is an outdated [[list with the available properties that are always saved (PBD) for FLASH1 as>>attach:FLASH1__DaqChannel2HdfNamePbd.xlsx]] HDF5 names and the corresponding DOOCS names
++
++[[Contents>>doc:||anchor="Contents"]]

Changes for page The FLASH HDF5 structure

Summary

Details

Applications

Navigation