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Last modified by makuadm on 2026-01-07 06:21
From version 19.1
edited by cpassow
on 2022-04-04 11:58
Change comment: There is no comment for this version
To version 29.1
edited by cpassow
on 2022-04-06 16:47
Change comment: There is no comment for this version

Summary

Details

Page properties
Title
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1 -DEMO - Documentation
1 +DEMO - Working with FLASH data
Content
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1 -(% style="list-style-type: square;" %)
2 -* Short descriptions including Links:
3 -(% style="list-style-type: square;" %)
4 -** GPFS
5 -** JupyterHub
6 -** conda ?
1 +Experimental data is recorded as HDF files[link] on the GPFS file system[link]. The access rights[link to ACLs] are linked to the user's DESY account and can be managed by the PI via the GAMMA portal[link]. The experimental data can be downloaded via the GAMMA portal, but it is advised to use the DESY computing infrastructure. Access point are via ssh[link], Maxwell-Display Server[link] or JuyterHub[link]. We recommmend using the JupyterHub for data exploration and the SLURM resources[link] for high performances computing.
7 7  
3 +For simplified acccess we provide a conda module flashh5[link] which can be installed in a personal conda environment[link] on the Maxwell Cluster. Example on the usage can be found here [link - repo + binder]
4 +
8 8  \\
9 9  
10 -(% style="list-style-type: square;" %)
11 -* Links Repository
12 -(% style="list-style-type: square;" %)
13 -** including Method Description?
7 +{{expand title="TEST - How to login JupyterHub"}}
14 14  
9 +
10 +{{view-file att--filename="tmp.mp4" height="250"/}}
11 +{{/expand}}
12 +
15 15  \\
16 16  
17 -(% style="list-style-type: square;" %)
18 -* Links to Binder
15 +\\
19 19  
17 +----
18 +
19 +=== TODO ===
20 +
21 +(% class="task-list" %)
22 +(((
23 +{{task reference="/Tasks/Task_18" status="InProgress"}}
24 +Short descriptions including Links:   → as Text\\
25 +
26 +(% class="task-list" %)
27 +(((
28 +
29 +
30 +{{task reference="/Tasks/Task_19" status="InProgress"}}
31 +GPFS
32 +{{/task}}
33 +
34 +{{task reference="/Tasks/Task_40" status="InProgress"}}
35 +Access rights
36 +{{/task}}
37 +
38 +{{task reference="/Tasks/Task_41" status="InProgress"}}
39 +Gamma Portal
40 +{{/task}}
41 +
42 +{{task reference="/Tasks/Task_42" status="InProgress"}}
43 +Maxwell
44 +{{/task}}
45 +
46 +{{task reference="/Tasks/Task_20" status="InProgress"}}
47 +JupyterHub
48 +{{/task}}
49 +
50 +{{task reference="/Tasks/Task_21" status="InProgress"}}
51 +conda ?
52 +{{/task}}
53 +
54 +{{task reference="/Tasks/Task_36" status="InProgress"}}
55 +explain install from channel instead of fixed environment, but can use environment file from example repository
56 +{{/task}}
57 +)))
58 +{{/task}}
59 +)))
60 +
20 20  \\
21 21  
22 -(% style="list-style-type: square;" %)
23 -* Screencast
63 +(% class="task-list" %)
64 +(((
65 +{{task reference="/Tasks/Task_22" status="InProgress"}}
66 +distribution
24 24  
68 +(% class="task-list" %)
69 +(((
70 +
71 +
72 +{{task reference="/Tasks/Task_23" status="InProgress"}}
73 +channel  (where to host?)
74 +{{/task}}
75 +
76 +{{task reference="/Tasks/Task_24" status="InProgress"}}
77 +environment file (repository with examples)
78 +{{/task}}
79 +)))
80 +{{/task}}
81 +)))
82 +
25 25  \\
26 26  
85 +(% class="task-list" %)
86 +(((
87 +{{task reference="/Tasks/Task_25" status="InProgress"}}
88 +Documentation
89 +
90 +(% class="task-list" %)
91 +(((
92 +
93 +
94 +{{task reference="/Tasks/Task_26" status="InProgress"}}
95 +here VS repository VS sphinx
96 +{{/task}}
97 +)))
98 +{{/task}}
99 +)))
100 +
27 27  \\
28 28  
29 -Questions:
103 +(% class="task-list" %)
104 +(((
105 +{{task reference="/Tasks/Task_27" status="InProgress"}}
106 +Binder
30 30  
31 -(% style="list-style-type: square;" %)
32 -* for whom
33 -* where Maxwell / local / extern
34 -* distribution\\
35 -(% style="list-style-type: square;" %)
36 -** channel?
37 -(% style="list-style-type: square;" %)
38 -*** where official hosted (DESY, privat, conda-forge)
39 -** enviroment?
40 -(% style="list-style-type: square;" %)
41 -*** via files / already created?
108 +(% class="task-list" %)
109 +(((
110 +
42 42  
112 +{{task reference="/Tasks/Task_28" status="InProgress"}}
113 +examples with Stefan
114 +{{/task}}
115 +)))
116 +{{/task}}
117 +)))
118 +
43 43  \\
44 44  
121 +(% class="task-list" %)
122 +(((
123 +{{task reference="/Tasks/Task_29" status="InProgress"}}
124 +Screencast
125 +
126 +(% class="task-list" %)
127 +(((
128 +
129 +
130 +{{task reference="/Tasks/Task_30" status="InProgress"}}
131 +login in jupyter hub
132 +{{/task}}
133 +
134 +{{task reference="/Tasks/Task_31" status="InProgress"}}
135 +login maxwell display
136 +{{/task}}
137 +
138 +{{task reference="/Tasks/Task_32" status="InProgress"}}
139 +use slix
140 +{{/task}}
141 +
142 +{{task reference="/Tasks/Task_33" status="InProgress"}}
143 +use hdfview plugin in jupterLab
144 +{{/task}}
145 +
146 +{{task reference="/Tasks/Task_34" status="InProgress"}}
147 +create conda env with flashh5
148 +{{/task}}
149 +)))
150 +{{/task}}
151 +)))
152 +
153 +\\
154 +
155 +\\
156 +
157 +----
158 +
159 +==== under review ====
160 +
161 +\\
162 +
45 45  {{code language="bash"}}
46 46  conda create -n flashh5 python=3.10 # 3.10 not necessary, but would prefer 3.8 or higher
47 47  source activate flashh5
... ... @@ -62,14 +62,15 @@
62 62  {{code language="py" title="moved to repository?"}}
63 63  class RunDirectory:
64 64  
65 - def get_run_table(): # more or less information? RunComment | Number of Files
183 + def get_run_table(): # more or less information? RunComment | Number of Files | start & stop time ?
66 66   ...
67 67  
68 - def get_run(daq, run_number): # daq is not needed
186 + def get_run(daq, run_number): # daq is not needed!
187 +
69 69   ...
70 70  
71 71  
72 -class Run:
191 +class Run: # constructor optional without RunDirectory or use there self.path
73 73  
74 74   def get_files():
75 75   ...
... ... @@ -82,9 +82,6 @@
82 82  
83 83   def get_stop_time(): # which? | better as attribute?
84 84   ...
85 -
86 -### for following methods to restrict number of files or separate method
87 -### e.g. create_df(files)
88 88  
89 89   def to_df(daq_map): # to_df(daq_map, slice) slice=[0:4] -> throw Exception
90 90   ...
... ... @@ -101,7 +101,7 @@
101 101  run.to_series(daq_adr or daq_map) # on channel only?
102 102  run.to_array(daq_adr) # on channel only?
103 103  
104 -## is this interesting?
220 +## interesting?
105 105  # run.to_dask(daq_map)
106 106  # run.to_xarray(daq_map)
107 107  {{/code}}