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Last modified by makuadm on 2026-01-07 06:21
From version 21.1
edited by cpassow
on 2022-04-05 14:40
Change comment: There is no comment for this version
To version 29.1
edited by cpassow
on 2022-04-06 16:47
Change comment: There is no comment for this version

Summary

Details

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Title
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1 -DEMO - Documentation
1 +DEMO - Working with FLASH data
Content
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1 -test
1 +Experimental data is recorded as HDF files[link] on the GPFS file system[link]. The access rights[link to ACLs] are linked to the user's DESY account and can be managed by the PI via the GAMMA portal[link]. The experimental data can be downloaded via the GAMMA portal, but it is advised to use the DESY computing infrastructure. Access point are via ssh[link], Maxwell-Display Server[link] or JuyterHub[link]. We recommmend using the JupyterHub for data exploration and the SLURM resources[link] for high performances computing.
2 2  
3 +For simplified acccess we provide a conda module flashh5[link] which can be installed in a personal conda environment[link] on the Maxwell Cluster. Example on the usage can be found here [link - repo + binder]
4 +
5 +\\
6 +
7 +{{expand title="TEST - How to login JupyterHub"}}
8 +
9 +
10 +{{view-file att--filename="tmp.mp4" height="250"/}}
11 +{{/expand}}
12 +
13 +\\
14 +
15 +\\
16 +
3 3  ----
4 4  
5 5  === TODO ===
6 6  
7 -(% style="list-style-type: square;" %)
8 -* Short descriptions including Links:   → as Text\\
9 -(% style="list-style-type: square;" %)
10 -** GPFS
11 -** JupyterHub
12 -** conda ?
21 +(% class="task-list" %)
22 +(((
23 +{{task reference="/Tasks/Task_18" status="InProgress"}}
24 +Short descriptions including Links:   → as Text\\
13 13  
26 +(% class="task-list" %)
27 +(((
28 +
29 +
30 +{{task reference="/Tasks/Task_19" status="InProgress"}}
31 +GPFS
32 +{{/task}}
33 +
34 +{{task reference="/Tasks/Task_40" status="InProgress"}}
35 +Access rights
36 +{{/task}}
37 +
38 +{{task reference="/Tasks/Task_41" status="InProgress"}}
39 +Gamma Portal
40 +{{/task}}
41 +
42 +{{task reference="/Tasks/Task_42" status="InProgress"}}
43 +Maxwell
44 +{{/task}}
45 +
46 +{{task reference="/Tasks/Task_20" status="InProgress"}}
47 +JupyterHub
48 +{{/task}}
49 +
50 +{{task reference="/Tasks/Task_21" status="InProgress"}}
51 +conda ?
52 +{{/task}}
53 +
54 +{{task reference="/Tasks/Task_36" status="InProgress"}}
55 +explain install from channel instead of fixed environment, but can use environment file from example repository
56 +{{/task}}
57 +)))
58 +{{/task}}
59 +)))
60 +
14 14  \\
15 15  
16 -* distribution
17 -** channel  (where to host?)
18 -** environment file (repository with examples)
63 +(% class="task-list" %)
64 +(((
65 +{{task reference="/Tasks/Task_22" status="InProgress"}}
66 +distribution
19 19  
68 +(% class="task-list" %)
69 +(((
70 +
71 +
72 +{{task reference="/Tasks/Task_23" status="InProgress"}}
73 +channel  (where to host?)
74 +{{/task}}
75 +
76 +{{task reference="/Tasks/Task_24" status="InProgress"}}
77 +environment file (repository with examples)
78 +{{/task}}
79 +)))
80 +{{/task}}
81 +)))
82 +
20 20  \\
21 21  
22 -(% style="list-style-type: square;" %)
23 -* Documentation
24 -(% style="list-style-type: square;" %)
25 -** here VS repository vs sphinx
85 +(% class="task-list" %)
86 +(((
87 +{{task reference="/Tasks/Task_25" status="InProgress"}}
88 +Documentation
26 26  
90 +(% class="task-list" %)
91 +(((
92 +
93 +
94 +{{task reference="/Tasks/Task_26" status="InProgress"}}
95 +here VS repository VS sphinx
96 +{{/task}}
97 +)))
98 +{{/task}}
99 +)))
100 +
27 27  \\
28 28  
29 -(% style="list-style-type: square;" %)
30 -* Binder
31 -(% style="list-style-type: square;" %)
32 -** examples with Stefan
103 +(% class="task-list" %)
104 +(((
105 +{{task reference="/Tasks/Task_27" status="InProgress"}}
106 +Binder
33 33  
108 +(% class="task-list" %)
109 +(((
110 +
111 +
112 +{{task reference="/Tasks/Task_28" status="InProgress"}}
113 +examples with Stefan
114 +{{/task}}
115 +)))
116 +{{/task}}
117 +)))
118 +
34 34  \\
35 35  
36 -(% style="list-style-type: square;" %)
37 -* Screencast
38 -(% style="list-style-type: square;" %)
39 -** login in jupyter hub
40 -** login maxwell display
41 -** use slix
42 -** use hdfview plugin in jupterLab
43 -** create conda env with flashh5
121 +(% class="task-list" %)
122 +(((
123 +{{task reference="/Tasks/Task_29" status="InProgress"}}
124 +Screencast
44 44  
126 +(% class="task-list" %)
127 +(((
128 +
129 +
130 +{{task reference="/Tasks/Task_30" status="InProgress"}}
131 +login in jupyter hub
132 +{{/task}}
133 +
134 +{{task reference="/Tasks/Task_31" status="InProgress"}}
135 +login maxwell display
136 +{{/task}}
137 +
138 +{{task reference="/Tasks/Task_32" status="InProgress"}}
139 +use slix
140 +{{/task}}
141 +
142 +{{task reference="/Tasks/Task_33" status="InProgress"}}
143 +use hdfview plugin in jupterLab
144 +{{/task}}
145 +
146 +{{task reference="/Tasks/Task_34" status="InProgress"}}
147 +create conda env with flashh5
148 +{{/task}}
149 +)))
150 +{{/task}}
151 +)))
152 +
45 45  \\
46 46  
47 47  \\
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80 80   ...
81 81  
82 82  
83 -class Run:
191 +class Run: # constructor optional without RunDirectory or use there self.path
84 84  
85 85   def get_files():
86 86   ...