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Last modified by sndueste on 2026-02-23 16:10
From version 21.1
edited by cpassow
on 2022-04-05 14:40
Change comment: There is no comment for this version
To version 35.1
edited by sndueste
on 2023-09-28 16:54
Change comment: There is no comment for this version

Summary

Details

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Title
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1 -DEMO - Documentation
1 +DEMO - Working with FLASH data
Author
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1 -XWiki.cpassow
1 +XWiki.sndueste
Content
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1 -test
1 +Experimental data is recorded as HDF files[link] on the GPFS file system[link]. The access rights[link to ACLs] are linked to the user's DESY account and can be managed by the PI via the GAMMA portal[link]. The experimental data can be downloaded via the GAMMA portal, but it is advised to use the DESY computing infrastructure. Access point are via ssh[link], Maxwell-Display Server[link] or JuyterHub[link]. We recommmend using the JupyterHub for data exploration and the SLURM resources[link] for high performances computing.
2 2  
3 +For simplified acccess we provide a conda module flashh5[link] which can be installed in a personal conda environment[link] on the Maxwell Cluster. Example on the usage can be found here [link - repo + binder]
4 +
5 +\\
6 +
7 +{{expand title="How to login JupyterHub"}}
8 +
9 +
10 +{{view-file att--filename="tmp.mp4" height="250"/}}
11 +{{/expand}}
12 +
13 +\\
14 +
15 +{{info}}
16 +=== Reference implementation (Python) ===
17 +
18 +(imperative)  (% class="Object" %)[[https:~~/~~/gitlab.desy.de/christopher.passow/flash-daq-hdf>>url:https://gitlab.desy.de/christopher.passow/flash-daq-hdf||shape="rect"]]
19 +
20 +(% class="Object" %)(object oriented) [[https:~~/~~/gitlab.desy.de/christopher.passow/fdh-builder>>url:https://gitlab.desy.de/christopher.passow/fdh-builder.git||shape="rect"]]
21 +
22 +\\
23 +{{/info}}
24 +
25 +link to Repos and Fab
26 +
27 +\\
28 +
29 +\\
30 +
31 +\\
32 +
33 +{{expand title="older ideas ..."}}
34 +\\
35 +
3 3  ----
4 4  
5 5  === TODO ===
6 6  
7 -(% style="list-style-type: square;" %)
8 -* Short descriptions including Links:   → as Text\\
9 -(% style="list-style-type: square;" %)
10 -** GPFS
11 -** JupyterHub
12 -** conda ?
40 +(% class="task-list" %)
41 +(((
42 +{{task reference="/Tasks/Task_18" status="InProgress"}}
43 +Short descriptions including Links:   → as Text\\
13 13  
45 +(% class="task-list" %)
46 +(((
47 +
48 +
49 +{{task reference="/Tasks/Task_19" status="InProgress"}}
50 +GPFS
51 +{{/task}}
52 +
53 +{{task reference="/Tasks/Task_40" status="InProgress"}}
54 +Access rights
55 +{{/task}}
56 +
57 +{{task reference="/Tasks/Task_41" status="InProgress"}}
58 +Gamma Portal
59 +{{/task}}
60 +
61 +{{task reference="/Tasks/Task_42" status="InProgress"}}
62 +Maxwell
63 +{{/task}}
64 +
65 +{{task reference="/Tasks/Task_20" status="InProgress"}}
66 +JupyterHub
67 +{{/task}}
68 +
69 +{{task reference="/Tasks/Task_21" status="InProgress"}}
70 +conda ?
71 +{{/task}}
72 +
73 +{{task reference="/Tasks/Task_36" status="InProgress"}}
74 +explain install from channel instead of fixed environment, but can use environment file from example repository
75 +{{/task}}
76 +)))
77 +{{/task}}
78 +)))
79 +
14 14  \\
15 15  
16 -* distribution
17 -** channel  (where to host?)
18 -** environment file (repository with examples)
82 +(% class="task-list" %)
83 +(((
84 +{{task reference="/Tasks/Task_22" status="InProgress"}}
85 +distribution
19 19  
87 +(% class="task-list" %)
88 +(((
89 +
90 +
91 +{{task reference="/Tasks/Task_23" status="InProgress"}}
92 +channel  (where to host?)
93 +{{/task}}
94 +
95 +{{task reference="/Tasks/Task_24" status="InProgress"}}
96 +environment file (repository with examples)
97 +{{/task}}
98 +)))
99 +{{/task}}
100 +)))
101 +
20 20  \\
21 21  
22 -(% style="list-style-type: square;" %)
23 -* Documentation
24 -(% style="list-style-type: square;" %)
25 -** here VS repository vs sphinx
104 +(% class="task-list" %)
105 +(((
106 +{{task reference="/Tasks/Task_25" status="InProgress"}}
107 +Documentation
26 26  
109 +(% class="task-list" %)
110 +(((
111 +
112 +
113 +{{task reference="/Tasks/Task_26" status="InProgress"}}
114 +here VS repository VS sphinx
115 +{{/task}}
116 +)))
117 +{{/task}}
118 +)))
119 +
27 27  \\
28 28  
29 -(% style="list-style-type: square;" %)
30 -* Binder
31 -(% style="list-style-type: square;" %)
32 -** examples with Stefan
122 +(% class="task-list" %)
123 +(((
124 +{{task reference="/Tasks/Task_27" status="InProgress"}}
125 +Binder
33 33  
127 +(% class="task-list" %)
128 +(((
129 +
130 +
131 +{{task reference="/Tasks/Task_28" status="InProgress"}}
132 +examples with Stefan
133 +{{/task}}
134 +)))
135 +{{/task}}
136 +)))
137 +
34 34  \\
35 35  
36 -(% style="list-style-type: square;" %)
37 -* Screencast
38 -(% style="list-style-type: square;" %)
39 -** login in jupyter hub
40 -** login maxwell display
41 -** use slix
42 -** use hdfview plugin in jupterLab
43 -** create conda env with flashh5
140 +(% class="task-list" %)
141 +(((
142 +{{task reference="/Tasks/Task_29" status="InProgress"}}
143 +Screencast
44 44  
145 +(% class="task-list" %)
146 +(((
147 +
148 +
149 +{{task reference="/Tasks/Task_30" status="InProgress"}}
150 +login in jupyter hub
151 +{{/task}}
152 +
153 +{{task reference="/Tasks/Task_31" status="InProgress"}}
154 +login maxwell display
155 +{{/task}}
156 +
157 +{{task reference="/Tasks/Task_32" status="InProgress"}}
158 +use slix
159 +{{/task}}
160 +
161 +{{task reference="/Tasks/Task_33" status="InProgress"}}
162 +use hdfview plugin in jupterLab
163 +{{/task}}
164 +
165 +{{task reference="/Tasks/Task_34" status="InProgress"}}
166 +create conda env with flashh5
167 +{{/task}}
168 +)))
169 +{{/task}}
170 +)))
171 +
45 45  \\
46 46  
47 47  \\
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80 80   ...
81 81  
82 82  
83 -class Run:
210 +class Run: # constructor optional without RunDirectory or use there self.path
84 84  
85 85   def get_files():
86 86   ...
... ... @@ -115,3 +115,6 @@
115 115  {{/code}}
116 116  
117 117  \\
245 +
246 +\\
247 +{{/expand}}