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Last modified by makuadm on 2026-01-07 06:21
From version 21.1
edited by cpassow
on 2022-04-05 14:40
Change comment: There is no comment for this version
To version 36.1
edited by sndueste
on 2023-09-29 11:07
Change comment: There is no comment for this version

Summary

Details

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Title
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1 -DEMO - Documentation
1 +DEMO - Working with FLASH data
Author
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1 -XWiki.cpassow
1 +XWiki.sndueste
Content
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1 -test
1 +Experimental data is recorded as HDF files[link] on the GPFS file system[link]. The access rights[link to ACLs] are linked to the user's DESY account and can be managed by the PI via the GAMMA portal[link]. The experimental data can be downloaded via the GAMMA portal, but it is advised to use the DESY computing infrastructure. Access point are via ssh[link], Maxwell-Display Server[link] or JuyterHub[link]. We recommmend using the JupyterHub for data exploration and the SLURM resources[link] for high performances computing.
2 2  
3 +For simplified acccess we provide a conda module flashh5[link] which can be installed in a personal conda environment[link] on the Maxwell Cluster. Example on the usage can be found here [link - repo + binder]
4 +
5 +\\
6 +
7 +{{expand title="How to login JupyterHub"}}
8 +
9 +
10 +{{view-file att--filename="tmp.mp4" height="250"/}}
11 +{{/expand}}
12 +
13 +\\
14 +
15 +\\
16 +
17 +{{info}}
18 +=== There are different options that help you to work with the FLASH HDF5 data in Python ===
19 +
20 +The currently developed option for large data sets: [[the FAB package>>url:https://hasfcpkg.desy.de/fab/fab.html||shape="rect"]] ... see below
21 +
22 +and for smaller projects:  (% class="Object" %)[[https:~~/~~/gitlab.desy.de/christopher.passow/flash-daq-hdf>>url:https://gitlab.desy.de/christopher.passow/flash-daq-hdf||shape="rect"]]
23 +{{/info}}
24 +
25 +\\
26 +
27 +[[~[~[image:attach:image2023-9-29_11-1-37.png~]~]>>url:https://hasfcpkg.desy.de/fab/fab.html||shape="rect"]]
28 +
29 +\\
30 +
31 +{{expand title="older ideas ..."}}
32 +(% class="Object" %)(object oriented) [[https:~~/~~/gitlab.desy.de/christopher.passow/fdh-builder>>url:https://gitlab.desy.de/christopher.passow/fdh-builder.git||shape="rect"]]
33 +
3 3  ----
4 4  
5 5  === TODO ===
6 6  
7 -(% style="list-style-type: square;" %)
8 -* Short descriptions including Links:   → as Text\\
9 -(% style="list-style-type: square;" %)
10 -** GPFS
11 -** JupyterHub
12 -** conda ?
38 +(% class="task-list" %)
39 +(((
40 +{{task reference="/Tasks/Task_18" status="InProgress"}}
41 +Short descriptions including Links:   → as Text\\
13 13  
43 +(% class="task-list" %)
44 +(((
45 +
46 +
47 +{{task reference="/Tasks/Task_19" status="InProgress"}}
48 +GPFS
49 +{{/task}}
50 +
51 +{{task reference="/Tasks/Task_40" status="InProgress"}}
52 +Access rights
53 +{{/task}}
54 +
55 +{{task reference="/Tasks/Task_41" status="InProgress"}}
56 +Gamma Portal
57 +{{/task}}
58 +
59 +{{task reference="/Tasks/Task_42" status="InProgress"}}
60 +Maxwell
61 +{{/task}}
62 +
63 +{{task reference="/Tasks/Task_20" status="InProgress"}}
64 +JupyterHub
65 +{{/task}}
66 +
67 +{{task reference="/Tasks/Task_21" status="InProgress"}}
68 +conda ?
69 +{{/task}}
70 +
71 +{{task reference="/Tasks/Task_36" status="InProgress"}}
72 +explain install from channel instead of fixed environment, but can use environment file from example repository
73 +{{/task}}
74 +)))
75 +{{/task}}
76 +)))
77 +
14 14  \\
15 15  
16 -* distribution
17 -** channel  (where to host?)
18 -** environment file (repository with examples)
80 +(% class="task-list" %)
81 +(((
82 +{{task reference="/Tasks/Task_22" status="InProgress"}}
83 +distribution
19 19  
85 +(% class="task-list" %)
86 +(((
87 +
88 +
89 +{{task reference="/Tasks/Task_23" status="InProgress"}}
90 +channel  (where to host?)
91 +{{/task}}
92 +
93 +{{task reference="/Tasks/Task_24" status="InProgress"}}
94 +environment file (repository with examples)
95 +{{/task}}
96 +)))
97 +{{/task}}
98 +)))
99 +
20 20  \\
21 21  
22 -(% style="list-style-type: square;" %)
23 -* Documentation
24 -(% style="list-style-type: square;" %)
25 -** here VS repository vs sphinx
102 +(% class="task-list" %)
103 +(((
104 +{{task reference="/Tasks/Task_25" status="InProgress"}}
105 +Documentation
26 26  
107 +(% class="task-list" %)
108 +(((
109 +
110 +
111 +{{task reference="/Tasks/Task_26" status="InProgress"}}
112 +here VS repository VS sphinx
113 +{{/task}}
114 +)))
115 +{{/task}}
116 +)))
117 +
27 27  \\
28 28  
29 -(% style="list-style-type: square;" %)
30 -* Binder
31 -(% style="list-style-type: square;" %)
32 -** examples with Stefan
120 +(% class="task-list" %)
121 +(((
122 +{{task reference="/Tasks/Task_27" status="InProgress"}}
123 +Binder
33 33  
125 +(% class="task-list" %)
126 +(((
127 +
128 +
129 +{{task reference="/Tasks/Task_28" status="InProgress"}}
130 +examples with Stefan
131 +{{/task}}
132 +)))
133 +{{/task}}
134 +)))
135 +
34 34  \\
35 35  
36 -(% style="list-style-type: square;" %)
37 -* Screencast
38 -(% style="list-style-type: square;" %)
39 -** login in jupyter hub
40 -** login maxwell display
41 -** use slix
42 -** use hdfview plugin in jupterLab
43 -** create conda env with flashh5
138 +(% class="task-list" %)
139 +(((
140 +{{task reference="/Tasks/Task_29" status="InProgress"}}
141 +Screencast
44 44  
143 +(% class="task-list" %)
144 +(((
145 +
146 +
147 +{{task reference="/Tasks/Task_30" status="InProgress"}}
148 +login in jupyter hub
149 +{{/task}}
150 +
151 +{{task reference="/Tasks/Task_31" status="InProgress"}}
152 +login maxwell display
153 +{{/task}}
154 +
155 +{{task reference="/Tasks/Task_32" status="InProgress"}}
156 +use slix
157 +{{/task}}
158 +
159 +{{task reference="/Tasks/Task_33" status="InProgress"}}
160 +use hdfview plugin in jupterLab
161 +{{/task}}
162 +
163 +{{task reference="/Tasks/Task_34" status="InProgress"}}
164 +create conda env with flashh5
165 +{{/task}}
166 +)))
167 +{{/task}}
168 +)))
169 +
45 45  \\
46 46  
47 47  \\
... ... @@ -80,7 +80,7 @@
80 80   ...
81 81  
82 82  
83 -class Run:
208 +class Run: # constructor optional without RunDirectory or use there self.path
84 84  
85 85   def get_files():
86 86   ...
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115 115  {{/code}}
116 116  
117 117  \\
243 +
244 +\\
245 +{{/expand}}