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Last modified by makuadm on 2026-01-07 06:21
From version 23.1
edited by cpassow
on 2022-04-05 16:14
Change comment: There is no comment for this version
To version 5.1
edited by cpassow
on 2022-04-04 08:48
Change comment: There is no comment for this version

Summary

Details

Page properties
Title
... ... @@ -1,1 +1,1 @@
1 -DEMO - Working with FLASH data
1 +DEMO - Documentation
Content
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1 -test
1 +(% style="list-style-type: square;" %)
2 +* Short descriptions including Links:
3 +(% style="list-style-type: square;" %)
4 +** GPFS
5 +** JupyterHub
6 +** conda ?
2 2  
3 -----
8 +(% style="list-style-type: square;" %)
9 +* Links Repository
10 +(% style="list-style-type: square;" %)
11 +** including Method Description
4 4  
5 -=== TODO ===
6 -
7 -(% class="task-list" %)
8 -(((
9 -{{task reference="/Tasks/Task_18" status="InProgress"}}
10 -Short descriptions including Links:   → as Text\\
11 -
12 -(% class="task-list" %)
13 -(((
14 -
15 -
16 -{{task reference="/Tasks/Task_19" status="InProgress"}}
17 -GPFS
18 -{{/task}}
19 -
20 -{{task reference="/Tasks/Task_20" status="InProgress"}}
21 -JupyterHub
22 -{{/task}}
23 -
24 -{{task reference="/Tasks/Task_21" status="InProgress"}}
25 -conda ?
26 -{{/task}}
27 -
28 -{{task reference="/Tasks/Task_36" status="InProgress"}}
29 -explain install from channel instead of fixed environment, but can use environment file from example repository
30 -{{/task}}
31 -)))
32 -{{/task}}
33 -)))
34 -
35 35  \\
36 36  
37 -(% class="task-list" %)
38 -(((
39 -{{task reference="/Tasks/Task_22" status="InProgress"}}
40 -distribution
15 +(% style="list-style-type: square;" %)
16 +* Links to Binder
41 41  
42 -(% class="task-list" %)
43 -(((
44 -
45 -
46 -{{task reference="/Tasks/Task_23" status="InProgress"}}
47 -channel  (where to host?)
48 -{{/task}}
49 -
50 -{{task reference="/Tasks/Task_24" status="InProgress"}}
51 -environment file (repository with examples)
52 -{{/task}}
53 -)))
54 -{{/task}}
55 -)))
56 -
57 57  \\
58 58  
59 -(% class="task-list" %)
60 -(((
61 -{{task reference="/Tasks/Task_25" status="InProgress"}}
62 -Documentation
63 -
64 -(% class="task-list" %)
65 -(((
66 -
67 -
68 -{{task reference="/Tasks/Task_26" status="InProgress"}}
69 -here VS repository VS sphinx
70 -{{/task}}
71 -)))
72 -{{/task}}
73 -)))
74 -
75 75  \\
76 76  
77 -(% class="task-list" %)
78 -(((
79 -{{task reference="/Tasks/Task_27" status="InProgress"}}
80 -Binder
22 +Questions:
81 81  
82 -(% class="task-list" %)
83 -(((
84 -
24 +(% style="list-style-type: square;" %)
25 +* for whom
26 +* where Maxwell / local / extern
27 +* distribution\\
28 +(% style="list-style-type: square;" %)
29 +** channel?
30 +(% style="list-style-type: square;" %)
31 +*** where official hosted (DESY, privat, conda-forge)
32 +** enviroment?
33 +(% style="list-style-type: square;" %)
34 +*** via files / already created?
85 85  
86 -{{task reference="/Tasks/Task_28" status="InProgress"}}
87 -examples with Stefan
88 -{{/task}}
89 -)))
90 -{{/task}}
91 -)))
92 -
93 93  \\
94 94  
95 -(% class="task-list" %)
96 -(((
97 -{{task reference="/Tasks/Task_29" status="InProgress"}}
98 -Screencast
99 -
100 -(% class="task-list" %)
101 -(((
102 -
103 -
104 -{{task reference="/Tasks/Task_30" status="InProgress"}}
105 -login in jupyter hub
106 -{{/task}}
107 -
108 -{{task reference="/Tasks/Task_31" status="InProgress"}}
109 -login maxwell display
110 -{{/task}}
111 -
112 -{{task reference="/Tasks/Task_32" status="InProgress"}}
113 -use slix
114 -{{/task}}
115 -
116 -{{task reference="/Tasks/Task_33" status="InProgress"}}
117 -use hdfview plugin in jupterLab
118 -{{/task}}
119 -
120 -{{task reference="/Tasks/Task_34" status="InProgress"}}
121 -create conda env with flashh5
122 -{{/task}}
123 -)))
124 -{{/task}}
125 -)))
126 -
127 -\\
128 -
129 -\\
130 -
131 -----
132 -
133 -==== under review ====
134 -
135 -\\
136 -
137 -{{code language="bash"}}
138 -conda create -n flashh5 python=3.10 # 3.10 not necessary, but would prefer 3.8 or higher
139 -source activate flashh5
140 -conda install ipython numpy pandas #TODO: fix dependcies
141 -conda install -c https://www.desy.de/~cpassow/condarepo/ flashh5
142 -
143 -## on jhub
144 -conda install ipykernel
145 -python -m ipykernel install --user --name flashh5 --display-name "flashh5"
146 -
147 -
148 -## to remove on jhub
149 -## delete from: /home/$USER/.local/share/jupyter/kernels/
150 -{{/code}}
151 -
152 -\\
153 -
154 -{{code language="py" title="moved to repository?"}}
38 +{{code language="py"}}
155 155  class RunDirectory:
156 156  
157 - def get_run_table(): # more or less information? RunComment | Number of Files | start & stop time ?
41 + def get_run_table(self):
158 158   ...
159 159  
160 - def get_run(daq, run_number): # daq is not needed!
161 -
44 + def get_run(self, daq, run_number):
162 162   ...
163 163  
164 164  
165 165  class Run:
166 166  
167 - def get_files():
50 + def get_files(self):
168 168   ...
169 169  
170 - def get_channels(): # of file #1
53 + def get_channels(self): # of file #1?
171 171   ...
172 172  
173 - def get_start_time(): # better as attribute?
56 + def get_start_time(self):
174 174   ...
175 175  
176 - def get_stop_time(): # which? | better as attribute?
59 + def get_stop_time(self): # which?
177 177   ...
178 -
179 - def to_df(daq_map): # to_df(daq_map, slice) slice=[0:4] -> throw Exception
61 +
62 + def to_df(self, channel_dict):
180 180   ...
181 181  
182 - def to_series(channel):
65 + def to_series(self, channel):
183 183   ...
184 184  
185 - def to_array(channel):
68 + def to_array(self, channel):
186 186   ...
187 187  {{/code}}
188 188  
189 -{{code language="py" title="ideas"}}
190 -run.to_df(daq_map)
191 -run.to_series(daq_adr or daq_map) # on channel only?
192 -run.to_array(daq_adr) # on channel only?
72 +{{code language="py"}}
73 +run.to_df(channel_dict)
74 +run.to_series(channel_string or channel_dict) # on channel only?
75 +run.to_array(channel_string) # on channel only?
193 193  
194 -## interesting?
195 -# run.to_dask(daq_map)
196 -# run.to_xarray(daq_map)
77 +# run.to_dask(dict)
78 +# run.to_xarray(dict)
197 197  {{/code}}
198 198  
199 199  \\