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Last modified by makuadm on 2026-01-07 06:21
From version 35.1
edited by sndueste
on 2023-09-28 16:54
Change comment: There is no comment for this version
To version 21.1
edited by cpassow
on 2022-04-05 14:40
Change comment: There is no comment for this version

Summary

Details

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1 -DEMO - Working with FLASH data
1 +DEMO - Documentation
Author
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1 -XWiki.sndueste
1 +XWiki.cpassow
Content
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1 -Experimental data is recorded as HDF files[link] on the GPFS file system[link]. The access rights[link to ACLs] are linked to the user's DESY account and can be managed by the PI via the GAMMA portal[link]. The experimental data can be downloaded via the GAMMA portal, but it is advised to use the DESY computing infrastructure. Access point are via ssh[link], Maxwell-Display Server[link] or JuyterHub[link]. We recommmend using the JupyterHub for data exploration and the SLURM resources[link] for high performances computing.
1 +test
2 2  
3 -For simplified acccess we provide a conda module flashh5[link] which can be installed in a personal conda environment[link] on the Maxwell Cluster. Example on the usage can be found here [link - repo + binder]
4 -
5 -\\
6 -
7 -{{expand title="How to login JupyterHub"}}
8 -
9 -
10 -{{view-file att--filename="tmp.mp4" height="250"/}}
11 -{{/expand}}
12 -
13 -\\
14 -
15 -{{info}}
16 -=== Reference implementation (Python) ===
17 -
18 -(imperative)  (% class="Object" %)[[https:~~/~~/gitlab.desy.de/christopher.passow/flash-daq-hdf>>url:https://gitlab.desy.de/christopher.passow/flash-daq-hdf||shape="rect"]]
19 -
20 -(% class="Object" %)(object oriented) [[https:~~/~~/gitlab.desy.de/christopher.passow/fdh-builder>>url:https://gitlab.desy.de/christopher.passow/fdh-builder.git||shape="rect"]]
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22 -\\
23 -{{/info}}
24 -
25 -link to Repos and Fab
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29 -\\
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31 -\\
32 -
33 -{{expand title="older ideas ..."}}
34 -\\
35 -
36 36  ----
37 37  
38 38  === TODO ===
39 39  
40 -(% class="task-list" %)
41 -(((
42 -{{task reference="/Tasks/Task_18" status="InProgress"}}
43 -Short descriptions including Links:   → as Text\\
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8 +* Short descriptions including Links:   → as Text\\
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10 +** GPFS
11 +** JupyterHub
12 +** conda ?
44 44  
45 -(% class="task-list" %)
46 -(((
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48 -
49 -{{task reference="/Tasks/Task_19" status="InProgress"}}
50 -GPFS
51 -{{/task}}
52 -
53 -{{task reference="/Tasks/Task_40" status="InProgress"}}
54 -Access rights
55 -{{/task}}
56 -
57 -{{task reference="/Tasks/Task_41" status="InProgress"}}
58 -Gamma Portal
59 -{{/task}}
60 -
61 -{{task reference="/Tasks/Task_42" status="InProgress"}}
62 -Maxwell
63 -{{/task}}
64 -
65 -{{task reference="/Tasks/Task_20" status="InProgress"}}
66 -JupyterHub
67 -{{/task}}
68 -
69 -{{task reference="/Tasks/Task_21" status="InProgress"}}
70 -conda ?
71 -{{/task}}
72 -
73 -{{task reference="/Tasks/Task_36" status="InProgress"}}
74 -explain install from channel instead of fixed environment, but can use environment file from example repository
75 -{{/task}}
76 -)))
77 -{{/task}}
78 -)))
79 -
80 80  \\
81 81  
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83 -(((
84 -{{task reference="/Tasks/Task_22" status="InProgress"}}
85 -distribution
16 +* distribution
17 +** channel  (where to host?)
18 +** environment file (repository with examples)
86 86  
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88 -(((
89 -
90 -
91 -{{task reference="/Tasks/Task_23" status="InProgress"}}
92 -channel  (where to host?)
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94 -
95 -{{task reference="/Tasks/Task_24" status="InProgress"}}
96 -environment file (repository with examples)
97 -{{/task}}
98 -)))
99 -{{/task}}
100 -)))
101 -
102 102  \\
103 103  
104 -(% class="task-list" %)
105 -(((
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107 -Documentation
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23 +* Documentation
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25 +** here VS repository vs sphinx
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112 -
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114 -here VS repository VS sphinx
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118 -)))
119 -
120 120  \\
121 121  
122 -(% class="task-list" %)
123 -(((
124 -{{task reference="/Tasks/Task_27" status="InProgress"}}
125 -Binder
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30 +* Binder
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32 +** examples with Stefan
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132 -examples with Stefan
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136 -)))
137 -
138 138  \\
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143 -Screencast
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37 +* Screencast
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39 +** login in jupyter hub
40 +** login maxwell display
41 +** use slix
42 +** use hdfview plugin in jupterLab
43 +** create conda env with flashh5
144 144  
145 -(% class="task-list" %)
146 -(((
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148 -
149 -{{task reference="/Tasks/Task_30" status="InProgress"}}
150 -login in jupyter hub
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152 -
153 -{{task reference="/Tasks/Task_31" status="InProgress"}}
154 -login maxwell display
155 -{{/task}}
156 -
157 -{{task reference="/Tasks/Task_32" status="InProgress"}}
158 -use slix
159 -{{/task}}
160 -
161 -{{task reference="/Tasks/Task_33" status="InProgress"}}
162 -use hdfview plugin in jupterLab
163 -{{/task}}
164 -
165 -{{task reference="/Tasks/Task_34" status="InProgress"}}
166 -create conda env with flashh5
167 -{{/task}}
168 -)))
169 -{{/task}}
170 -)))
171 -
172 172  \\
173 173  
174 174  \\
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207 207   ...
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209 209  
210 -class Run: # constructor optional without RunDirectory or use there self.path
83 +class Run:
211 211  
212 212   def get_files():
213 213   ...
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242 242  {{/code}}
243 243  
244 244  \\
245 -
246 -\\
247 -{{/expand}}