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Last modified by sndueste on 2026-02-23 16:10
From version 36.1
edited by sndueste
on 2023-09-29 11:07
Change comment: There is no comment for this version
To version 21.1
edited by cpassow
on 2022-04-05 14:40
Change comment: There is no comment for this version

Summary

Details

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1 -DEMO - Working with FLASH data
1 +DEMO - Documentation
Author
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1 -XWiki.sndueste
1 +XWiki.cpassow
Content
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1 -Experimental data is recorded as HDF files[link] on the GPFS file system[link]. The access rights[link to ACLs] are linked to the user's DESY account and can be managed by the PI via the GAMMA portal[link]. The experimental data can be downloaded via the GAMMA portal, but it is advised to use the DESY computing infrastructure. Access point are via ssh[link], Maxwell-Display Server[link] or JuyterHub[link]. We recommmend using the JupyterHub for data exploration and the SLURM resources[link] for high performances computing.
1 +test
2 2  
3 -For simplified acccess we provide a conda module flashh5[link] which can be installed in a personal conda environment[link] on the Maxwell Cluster. Example on the usage can be found here [link - repo + binder]
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5 -\\
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7 -{{expand title="How to login JupyterHub"}}
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10 -{{view-file att--filename="tmp.mp4" height="250"/}}
11 -{{/expand}}
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16 -
17 -{{info}}
18 -=== There are different options that help you to work with the FLASH HDF5 data in Python ===
19 -
20 -The currently developed option for large data sets: [[the FAB package>>url:https://hasfcpkg.desy.de/fab/fab.html||shape="rect"]] ... see below
21 -
22 -and for smaller projects:  (% class="Object" %)[[https:~~/~~/gitlab.desy.de/christopher.passow/flash-daq-hdf>>url:https://gitlab.desy.de/christopher.passow/flash-daq-hdf||shape="rect"]]
23 -{{/info}}
24 -
25 -\\
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27 -[[~[~[image:attach:image2023-9-29_11-1-37.png~]~]>>url:https://hasfcpkg.desy.de/fab/fab.html||shape="rect"]]
28 -
29 -\\
30 -
31 -{{expand title="older ideas ..."}}
32 -(% class="Object" %)(object oriented) [[https:~~/~~/gitlab.desy.de/christopher.passow/fdh-builder>>url:https://gitlab.desy.de/christopher.passow/fdh-builder.git||shape="rect"]]
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34 34  ----
35 35  
36 36  === TODO ===
37 37  
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40 -{{task reference="/Tasks/Task_18" status="InProgress"}}
41 -Short descriptions including Links:   → as Text\\
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8 +* Short descriptions including Links:   → as Text\\
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10 +** GPFS
11 +** JupyterHub
12 +** conda ?
42 42  
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44 -(((
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46 -
47 -{{task reference="/Tasks/Task_19" status="InProgress"}}
48 -GPFS
49 -{{/task}}
50 -
51 -{{task reference="/Tasks/Task_40" status="InProgress"}}
52 -Access rights
53 -{{/task}}
54 -
55 -{{task reference="/Tasks/Task_41" status="InProgress"}}
56 -Gamma Portal
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58 -
59 -{{task reference="/Tasks/Task_42" status="InProgress"}}
60 -Maxwell
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62 -
63 -{{task reference="/Tasks/Task_20" status="InProgress"}}
64 -JupyterHub
65 -{{/task}}
66 -
67 -{{task reference="/Tasks/Task_21" status="InProgress"}}
68 -conda ?
69 -{{/task}}
70 -
71 -{{task reference="/Tasks/Task_36" status="InProgress"}}
72 -explain install from channel instead of fixed environment, but can use environment file from example repository
73 -{{/task}}
74 -)))
75 -{{/task}}
76 -)))
77 -
78 78  \\
79 79  
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81 -(((
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83 -distribution
16 +* distribution
17 +** channel  (where to host?)
18 +** environment file (repository with examples)
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88 -
89 -{{task reference="/Tasks/Task_23" status="InProgress"}}
90 -channel  (where to host?)
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93 -{{task reference="/Tasks/Task_24" status="InProgress"}}
94 -environment file (repository with examples)
95 -{{/task}}
96 -)))
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98 -)))
99 -
100 100  \\
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105 -Documentation
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23 +* Documentation
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25 +** here VS repository vs sphinx
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112 -here VS repository VS sphinx
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118 118  \\
119 119  
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123 -Binder
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30 +* Binder
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32 +** examples with Stefan
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130 -examples with Stefan
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141 -Screencast
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37 +* Screencast
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39 +** login in jupyter hub
40 +** login maxwell display
41 +** use slix
42 +** use hdfview plugin in jupterLab
43 +** create conda env with flashh5
142 142  
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144 -(((
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146 -
147 -{{task reference="/Tasks/Task_30" status="InProgress"}}
148 -login in jupyter hub
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150 -
151 -{{task reference="/Tasks/Task_31" status="InProgress"}}
152 -login maxwell display
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154 -
155 -{{task reference="/Tasks/Task_32" status="InProgress"}}
156 -use slix
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158 -
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160 -use hdfview plugin in jupterLab
161 -{{/task}}
162 -
163 -{{task reference="/Tasks/Task_34" status="InProgress"}}
164 -create conda env with flashh5
165 -{{/task}}
166 -)))
167 -{{/task}}
168 -)))
169 -
170 170  \\
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205 205   ...
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208 -class Run: # constructor optional without RunDirectory or use there self.path
83 +class Run:
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210 210   def get_files():
211 211   ...
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240 240  {{/code}}
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242 242  \\
243 -
244 -\\
245 -{{/expand}}