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Last modified by makuadm on 2026-01-07 06:21
From version 37.1
edited by sndueste
on 2023-09-29 11:13
Change comment: There is no comment for this version
To version 21.1
edited by cpassow
on 2022-04-05 14:40
Change comment: There is no comment for this version

Summary

Details

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1 -DEMO - Working with FLASH data
1 +DEMO - Documentation
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1 -XWiki.sndueste
1 +XWiki.cpassow
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1 -Experimental data is recorded as HDF files[[~[link~]>>doc:FLASHUSER.Data Acquisition and controls.Data Access at FLASH (DAQ, gpfs,\.\.\.).Offline data analysis (DAQ).The FLASH HDF5 structure.WebHome]] on the GPFS file system[[~[link~]>>doc:ASAP3.ASAP3 Data Storage for PETRA III]]. The access rights are linked to the user's DESY account and can be managed by the PI via the GAMMA portal[[~[link~]>>url:https://gamma-portal.desy.de/||shape="rect"]]. The experimental data can be downloaded via the GAMMA portal, but it is advised to use the DESY computing infrastructure. Access point are via ssh, Maxwell-Display Server[[~[link~]>>url:https://confluence.desy.de/display/MXW/Maxwell+Cluster||shape="rect"]] or JuyterHub[[~[link~]>>url:https://confluence.desy.de/display/MXW/JupyterHub+on+Maxwell||shape="rect"]]. We recommend using the JupyterHub for data exploration and the SLURM resources for high performances computing - see FAB for easy usage of the infrastructure.
1 +test
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5 -{{expand title="How to login JupyterHub"}}
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15 -{{info}}
16 -=== There are different options that help you to work with the FLASH HDF5 data in Python ===
17 -
18 -The currently developed option for large data sets: [[the FAB package>>url:https://hasfcpkg.desy.de/fab/fab.html||shape="rect"]] ... see below
19 -
20 -and for smaller projects:  (% class="Object" %)[[https:~~/~~/gitlab.desy.de/christopher.passow/flash-daq-hdf>>url:https://gitlab.desy.de/christopher.passow/flash-daq-hdf||shape="rect"]]
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25 -[[~[~[image:attach:image2023-9-29_11-1-37.png~]~]>>url:https://hasfcpkg.desy.de/fab/fab.html||shape="rect"]]
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29 -{{expand title="older ideas ..."}}
30 -(% class="Object" %)(object oriented) [[https:~~/~~/gitlab.desy.de/christopher.passow/fdh-builder>>url:https://gitlab.desy.de/christopher.passow/fdh-builder.git||shape="rect"]]
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32 32  ----
33 33  
34 34  === TODO ===
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39 -Short descriptions including Links:   → as Text\\
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8 +* Short descriptions including Links:   → as Text\\
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10 +** GPFS
11 +** JupyterHub
12 +** conda ?
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45 -{{task reference="/Tasks/Task_19" status="InProgress"}}
46 -GPFS
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50 -Access rights
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54 -Gamma Portal
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58 -Maxwell
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60 -
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62 -JupyterHub
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65 -{{task reference="/Tasks/Task_21" status="InProgress"}}
66 -conda ?
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68 -
69 -{{task reference="/Tasks/Task_36" status="InProgress"}}
70 -explain install from channel instead of fixed environment, but can use environment file from example repository
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72 -)))
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74 -)))
75 -
76 76  \\
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81 -distribution
16 +* distribution
17 +** channel  (where to host?)
18 +** environment file (repository with examples)
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88 -channel  (where to host?)
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92 -environment file (repository with examples)
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98 98  \\
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103 -Documentation
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23 +* Documentation
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25 +** here VS repository vs sphinx
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110 -here VS repository VS sphinx
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121 -Binder
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30 +* Binder
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32 +** examples with Stefan
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128 -examples with Stefan
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139 -Screencast
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37 +* Screencast
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39 +** login in jupyter hub
40 +** login maxwell display
41 +** use slix
42 +** use hdfview plugin in jupterLab
43 +** create conda env with flashh5
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145 -{{task reference="/Tasks/Task_30" status="InProgress"}}
146 -login in jupyter hub
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150 -login maxwell display
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154 -use slix
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158 -use hdfview plugin in jupterLab
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161 -{{task reference="/Tasks/Task_34" status="InProgress"}}
162 -create conda env with flashh5
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206 -class Run: # constructor optional without RunDirectory or use there self.path
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208 208   def get_files():
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238 238  {{/code}}
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