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Last modified by makuadm on 2026-01-07 06:21
From version 48.1
edited by makuadm
on 2026-01-07 00:43
Change comment: Task [xwiki:FLASHUSER.Offline data analysis (DAQ).DEMO - Working with FLASH data.Tasks.Task_29.WebHome] has been updated!
To version 42.1
edited by sndueste
on 2025-02-05 14:41
Change comment: There is no comment for this version

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1 -FLASHUSER.Offline data analysis (DAQ).WebHome
1 +FLASHUSER.Data Acquisition and controls.DAQ and controls overview.Offline data analysis (DAQ).WebHome
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1 -XWiki.makuadm
1 +XWiki.sndueste
Content
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1 -Experimental data is recorded as HDF files[[~[link~]>>doc:FS-FLASH USER tmp.Data Acquisition and controls 1.DAQ and controls overview.Offline data analysis (DAQ).The FLASH HDF5 structure.WebHome]] on the GPFS file system[[~[link~]>>https://docs.desy.de/asap3/]]. The access rights are linked to the user's DESY account and can be managed by the PI via the GAMMA portal[[~[link~]>>url:https://gamma-portal.desy.de/||shape="rect"]]. The experimental data can be downloaded via the GAMMA portal, but it is advised to use the DESY computing infrastructure. Access point are via ssh, Maxwell-Display Server[[~[link~]>>url:https://confluence.desy.de/display/MXW/Maxwell+Cluster||shape="rect"]] or JuyterHub[[~[link~]>>url:https://confluence.desy.de/display/MXW/JupyterHub+on+Maxwell||shape="rect"]]. We recommend using the JupyterHub for data exploration and the SLURM resources for high performances computing - see FAB for easy usage of the infrastructure.
1 +Experimental data is recorded as HDF files[[~[link~]>>doc:FLASHUSER.Data Acquisition and controls.DAQ and controls overview.Offline data analysis (DAQ).The FLASH HDF5 structure.WebHome]] on the GPFS file system[[~[link~]>>https://docs.desy.de/asap3/]]. The access rights are linked to the user's DESY account and can be managed by the PI via the GAMMA portal[[~[link~]>>url:https://gamma-portal.desy.de/||shape="rect"]]. The experimental data can be downloaded via the GAMMA portal, but it is advised to use the DESY computing infrastructure. Access point are via ssh, Maxwell-Display Server[[~[link~]>>url:https://confluence.desy.de/display/MXW/Maxwell+Cluster||shape="rect"]] or JuyterHub[[~[link~]>>url:https://confluence.desy.de/display/MXW/JupyterHub+on+Maxwell||shape="rect"]]. We recommend using the JupyterHub for data exploration and the SLURM resources for high performances computing - see FAB for easy usage of the infrastructure.
2 2  
3 3  {{info title="How to login JupyterHub"}}
4 -=== ===
4 +=== ===
5 5  
6 6  {{view-file att--filename="tmp.mp4" height="150"/}}
7 7  {{/info}}
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12 12  * The currently developed option for large data sets: [[the FAB package>>url:https://hasfcpkg.desy.de/fab/fab.html||shape="rect"]] ... see below
13 13  * and for smaller projects:  (% class="Object" %)[[https:~~/~~/gitlab.desy.de/christopher.passow/flash-daq-hdf>>url:https://gitlab.desy.de/christopher.passow/flash-daq-hdf||shape="rect"]]
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15 -(% class="Object" %)See also the collection of Demo data and sample scripts : [[doc:FS-FLASH USER tmp.Data Acquisition and controls 1.DAQ and controls overview.Offline data analysis (DAQ).Collection of HDF5 sample data from different beamlines.WebHome]]
15 +(% class="Object" %)See also the collection of Demo data and sample scripts : [[doc:FLASHUSER.Data Acquisition and controls.DAQ and controls overview.Offline data analysis (DAQ).Collection of HDF5 sample data from different beamlines.WebHome]]
16 16  {{/info}}
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27 27  
28 28  (% class="task-list" %)
29 29  (((
30 -{{task reference="/Tasks/Task_18" status="InProgress" completeDate="" createDate="2026-01-06" reporter=""}}
30 +{{task reference="/Tasks/Task_18" status="InProgress"}}
31 31  Short descriptions including Links:   → as Text
32 -\\
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33 +(% class="task-list" %)
34 +(((
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37 +{{task reference="/Tasks/Task_19" status="InProgress"}}
38 +GPFS
33 33  {{/task}}
40 +
41 +{{task reference="/Tasks/Task_40" status="InProgress"}}
42 +Access rights
43 +{{/task}}
44 +
45 +{{task reference="/Tasks/Task_41" status="InProgress"}}
46 +Gamma Portal
47 +{{/task}}
48 +
49 +{{task reference="/Tasks/Task_42" status="InProgress"}}
50 +Maxwell
51 +{{/task}}
52 +
53 +{{task reference="/Tasks/Task_20" status="InProgress"}}
54 +JupyterHub
55 +{{/task}}
56 +
57 +{{task reference="/Tasks/Task_21" status="InProgress"}}
58 +conda ?
59 +{{/task}}
60 +
61 +{{task reference="/Tasks/Task_36" status="InProgress"}}
62 +explain install from channel instead of fixed environment, but can use environment file from example repository
63 +{{/task}}
34 34  )))
65 +{{/task}}
66 +)))
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36 36  
37 37  (% class="task-list" %)
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43 43  (((
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46 -{{task reference="/Tasks/Task_23" status="InProgress" completeDate="" createDate="2026-01-06" reporter=""}}
78 +{{task reference="/Tasks/Task_23" status="InProgress"}}
47 47  channel  (where to host?)
48 48  {{/task}}
49 49  
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91 91  
92 92  (% class="task-list" %)
93 93  (((
94 -{{task reference="/Tasks/Task_29" status="InProgress" completeDate="" createDate="2026-01-07" reporter=""}}
126 +{{task reference="/Tasks/Task_29" status="InProgress"}}
95 95  Screencast
96 -\\
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129 +(% class="task-list" %)
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133 +{{task reference="/Tasks/Task_30" status="InProgress"}}
134 +login in jupyter hub
97 97  {{/task}}
136 +
137 +{{task reference="/Tasks/Task_31" status="InProgress"}}
138 +login maxwell display
139 +{{/task}}
140 +
141 +{{task reference="/Tasks/Task_32" status="InProgress"}}
142 +use slix
143 +{{/task}}
144 +
145 +{{task reference="/Tasks/Task_33" status="InProgress"}}
146 +use hdfview plugin in jupterLab
147 +{{/task}}
148 +
149 +{{task reference="/Tasks/Task_34" status="InProgress"}}
150 +create conda env with flashh5
151 +{{/task}}
98 98  )))
153 +{{/task}}
154 +)))
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