Wiki source code of DEMO - Working with FLASH data
Version 22.1 by cpassow on 2022-04-05 14:42
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21.1 | 1 | test |
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| 3 | ---- | ||
| 4 | |||
| 5 | === TODO === | ||
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22.1 | 7 | (% class="task-list" %) |
| 8 | ((( | ||
| 9 | {{task reference="/Tasks/Task_18" status="InProgress"}} | ||
| 10 | Short descriptions including Links: → as Text\\ | ||
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2.1 | 11 | |
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22.1 | 12 | (% class="task-list" %) |
| 13 | ((( | ||
| 14 | |||
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| 16 | {{task reference="/Tasks/Task_19" status="InProgress"}} | ||
| 17 | GPFS | ||
| 18 | {{/task}} | ||
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| 20 | {{task reference="/Tasks/Task_20" status="InProgress"}} | ||
| 21 | JupyterHub | ||
| 22 | {{/task}} | ||
| 23 | |||
| 24 | {{task reference="/Tasks/Task_21" status="InProgress"}} | ||
| 25 | conda ? | ||
| 26 | {{/task}} | ||
| 27 | ))) | ||
| 28 | {{/task}} | ||
| 29 | ))) | ||
| 30 | |||
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8.1 | 31 | \\ |
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22.1 | 33 | (% class="task-list" %) |
| 34 | ((( | ||
| 35 | {{task reference="/Tasks/Task_22" status="InProgress"}} | ||
| 36 | distribution | ||
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21.1 | 37 | |
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22.1 | 38 | (% class="task-list" %) |
| 39 | ((( | ||
| 40 | |||
| 41 | |||
| 42 | {{task reference="/Tasks/Task_23" status="InProgress"}} | ||
| 43 | channel (where to host?) | ||
| 44 | {{/task}} | ||
| 45 | |||
| 46 | {{task reference="/Tasks/Task_24" status="InProgress"}} | ||
| 47 | environment file (repository with examples) | ||
| 48 | {{/task}} | ||
| 49 | ))) | ||
| 50 | {{/task}} | ||
| 51 | ))) | ||
| 52 | |||
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21.1 | 53 | \\ |
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22.1 | 55 | (% class="task-list" %) |
| 56 | ((( | ||
| 57 | {{task reference="/Tasks/Task_25" status="InProgress"}} | ||
| 58 | Documentation | ||
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2.1 | 59 | |
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22.1 | 60 | (% class="task-list" %) |
| 61 | ((( | ||
| 62 | |||
| 63 | |||
| 64 | {{task reference="/Tasks/Task_26" status="InProgress"}} | ||
| 65 | here VS repository VS sphinx | ||
| 66 | {{/task}} | ||
| 67 | ))) | ||
| 68 | {{/task}} | ||
| 69 | ))) | ||
| 70 | |||
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2.1 | 71 | \\ |
| 72 | |||
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22.1 | 73 | (% class="task-list" %) |
| 74 | ((( | ||
| 75 | {{task reference="/Tasks/Task_27" status="InProgress"}} | ||
| 76 | Binder | ||
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2.1 | 77 | |
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22.1 | 78 | (% class="task-list" %) |
| 79 | ((( | ||
| 80 | |||
| 81 | |||
| 82 | {{task reference="/Tasks/Task_28" status="InProgress"}} | ||
| 83 | examples with Stefan | ||
| 84 | {{/task}} | ||
| 85 | ))) | ||
| 86 | {{/task}} | ||
| 87 | ))) | ||
| 88 | |||
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2.1 | 89 | \\ |
| 90 | |||
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22.1 | 91 | (% class="task-list" %) |
| 92 | ((( | ||
| 93 | {{task reference="/Tasks/Task_29" status="InProgress"}} | ||
| 94 | Screencast | ||
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15.1 | 95 | |
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22.1 | 96 | (% class="task-list" %) |
| 97 | ((( | ||
| 98 | |||
| 99 | |||
| 100 | {{task reference="/Tasks/Task_30" status="InProgress"}} | ||
| 101 | login in jupyter hub | ||
| 102 | {{/task}} | ||
| 103 | |||
| 104 | {{task reference="/Tasks/Task_31" status="InProgress"}} | ||
| 105 | login maxwell display | ||
| 106 | {{/task}} | ||
| 107 | |||
| 108 | {{task reference="/Tasks/Task_32" status="InProgress"}} | ||
| 109 | use slix | ||
| 110 | {{/task}} | ||
| 111 | |||
| 112 | {{task reference="/Tasks/Task_33" status="InProgress"}} | ||
| 113 | use hdfview plugin in jupterLab | ||
| 114 | {{/task}} | ||
| 115 | |||
| 116 | {{task reference="/Tasks/Task_34" status="InProgress"}} | ||
| 117 | create conda env with flashh5 | ||
| 118 | {{/task}} | ||
| 119 | ))) | ||
| 120 | {{/task}} | ||
| 121 | ))) | ||
| 122 | |||
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2.1 | 123 | \\ |
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15.1 | 125 | \\ |
| 126 | |||
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21.1 | 127 | ---- |
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2.1 | 128 | |
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21.1 | 129 | ==== under review ==== |
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4.1 | 130 | |
| 131 | \\ | ||
| 132 | |||
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8.1 | 133 | {{code language="bash"}} |
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9.1 | 134 | conda create -n flashh5 python=3.10 # 3.10 not necessary, but would prefer 3.8 or higher |
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8.1 | 135 | source activate flashh5 |
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10.1 | 136 | conda install ipython numpy pandas #TODO: fix dependcies |
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8.1 | 137 | conda install -c https://www.desy.de/~cpassow/condarepo/ flashh5 |
| 138 | |||
| 139 | ## on jhub | ||
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11.1 | 140 | conda install ipykernel |
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8.1 | 141 | python -m ipykernel install --user --name flashh5 --display-name "flashh5" |
| 142 | |||
| 143 | |||
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11.1 | 144 | ## to remove on jhub |
| 145 | ## delete from: /home/$USER/.local/share/jupyter/kernels/ | ||
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8.1 | 146 | {{/code}} |
| 147 | |||
| 148 | \\ | ||
| 149 | |||
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6.1 | 150 | {{code language="py" title="moved to repository?"}} |
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4.1 | 151 | class RunDirectory: |
| 152 | |||
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21.1 | 153 | def get_run_table(): # more or less information? RunComment | Number of Files | start & stop time ? |
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4.1 | 154 | ... |
| 155 | |||
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21.1 | 156 | def get_run(daq, run_number): # daq is not needed! |
| 157 | |||
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4.1 | 158 | ... |
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| 160 | |||
| 161 | class Run: | ||
| 162 | |||
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7.1 | 163 | def get_files(): |
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4.1 | 164 | ... |
| 165 | |||
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18.1 | 166 | def get_channels(): # of file #1 |
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4.1 | 167 | ... |
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8.1 | 169 | def get_start_time(): # better as attribute? |
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4.1 | 170 | ... |
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8.1 | 172 | def get_stop_time(): # which? | better as attribute? |
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4.1 | 173 | ... |
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12.1 | 174 | |
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19.1 | 175 | def to_df(daq_map): # to_df(daq_map, slice) slice=[0:4] -> throw Exception |
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4.1 | 176 | ... |
| 177 | |||
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7.1 | 178 | def to_series(channel): |
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4.1 | 179 | ... |
| 180 | |||
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7.1 | 181 | def to_array(channel): |
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4.1 | 182 | ... |
| 183 | {{/code}} | ||
| 184 | |||
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6.1 | 185 | {{code language="py" title="ideas"}} |
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10.1 | 186 | run.to_df(daq_map) |
| 187 | run.to_series(daq_adr or daq_map) # on channel only? | ||
| 188 | run.to_array(daq_adr) # on channel only? | ||
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5.1 | 189 | |
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21.1 | 190 | ## interesting? |
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10.1 | 191 | # run.to_dask(daq_map) |
| 192 | # run.to_xarray(daq_map) | ||
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5.1 | 193 | {{/code}} |
| 194 | |||
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4.1 | 195 | \\ |