Wiki source code of DEMO - Working with FLASH data
Version 25.1 by cpassow on 2022-04-05 17:26
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| author | version | line-number | content |
|---|---|---|---|
| 1 | test | ||
| 2 | |||
| 3 | ---- | ||
| 4 | |||
| 5 | === TODO === | ||
| 6 | |||
| 7 | (% class="task-list" %) | ||
| 8 | ((( | ||
| 9 | {{task reference="/Tasks/Task_18" status="InProgress"}} | ||
| 10 | Short descriptions including Links: → as Text\\ | ||
| 11 | |||
| 12 | (% class="task-list" %) | ||
| 13 | ((( | ||
| 14 | |||
| 15 | |||
| 16 | {{task reference="/Tasks/Task_19" status="InProgress"}} | ||
| 17 | GPFS | ||
| 18 | {{/task}} | ||
| 19 | |||
| 20 | {{task reference="/Tasks/Task_20" status="InProgress"}} | ||
| 21 | JupyterHub | ||
| 22 | {{/task}} | ||
| 23 | |||
| 24 | {{task reference="/Tasks/Task_21" status="InProgress"}} | ||
| 25 | conda ? | ||
| 26 | {{/task}} | ||
| 27 | |||
| 28 | {{task reference="/Tasks/Task_36" status="InProgress"}} | ||
| 29 | explain install from channel instead of fixed environment, but can use environment file from example repository | ||
| 30 | {{/task}} | ||
| 31 | ))) | ||
| 32 | {{/task}} | ||
| 33 | ))) | ||
| 34 | |||
| 35 | \\ | ||
| 36 | |||
| 37 | (% class="task-list" %) | ||
| 38 | ((( | ||
| 39 | {{task reference="/Tasks/Task_22" status="InProgress"}} | ||
| 40 | distribution | ||
| 41 | |||
| 42 | (% class="task-list" %) | ||
| 43 | ((( | ||
| 44 | |||
| 45 | |||
| 46 | {{task reference="/Tasks/Task_23" status="InProgress"}} | ||
| 47 | channel (where to host?) | ||
| 48 | {{/task}} | ||
| 49 | |||
| 50 | {{task reference="/Tasks/Task_24" status="InProgress"}} | ||
| 51 | environment file (repository with examples) | ||
| 52 | {{/task}} | ||
| 53 | ))) | ||
| 54 | {{/task}} | ||
| 55 | ))) | ||
| 56 | |||
| 57 | \\ | ||
| 58 | |||
| 59 | (% class="task-list" %) | ||
| 60 | ((( | ||
| 61 | {{task reference="/Tasks/Task_25" status="InProgress"}} | ||
| 62 | Documentation | ||
| 63 | |||
| 64 | (% class="task-list" %) | ||
| 65 | ((( | ||
| 66 | |||
| 67 | |||
| 68 | {{task reference="/Tasks/Task_26" status="InProgress"}} | ||
| 69 | here VS repository VS sphinx | ||
| 70 | {{/task}} | ||
| 71 | ))) | ||
| 72 | {{/task}} | ||
| 73 | ))) | ||
| 74 | |||
| 75 | \\ | ||
| 76 | |||
| 77 | (% class="task-list" %) | ||
| 78 | ((( | ||
| 79 | {{task reference="/Tasks/Task_27" status="InProgress"}} | ||
| 80 | Binder | ||
| 81 | |||
| 82 | (% class="task-list" %) | ||
| 83 | ((( | ||
| 84 | |||
| 85 | |||
| 86 | {{task reference="/Tasks/Task_28" status="InProgress"}} | ||
| 87 | examples with Stefan | ||
| 88 | {{/task}} | ||
| 89 | ))) | ||
| 90 | {{/task}} | ||
| 91 | ))) | ||
| 92 | |||
| 93 | \\ | ||
| 94 | |||
| 95 | (% class="task-list" %) | ||
| 96 | ((( | ||
| 97 | {{task reference="/Tasks/Task_29" status="InProgress"}} | ||
| 98 | Screencast | ||
| 99 | |||
| 100 | (% class="task-list" %) | ||
| 101 | ((( | ||
| 102 | |||
| 103 | |||
| 104 | {{task reference="/Tasks/Task_30" status="InProgress"}} | ||
| 105 | login in jupyter hub | ||
| 106 | {{/task}} | ||
| 107 | |||
| 108 | {{task reference="/Tasks/Task_31" status="InProgress"}} | ||
| 109 | login maxwell display | ||
| 110 | {{/task}} | ||
| 111 | |||
| 112 | {{task reference="/Tasks/Task_32" status="InProgress"}} | ||
| 113 | use slix | ||
| 114 | {{/task}} | ||
| 115 | |||
| 116 | {{task reference="/Tasks/Task_33" status="InProgress"}} | ||
| 117 | use hdfview plugin in jupterLab | ||
| 118 | {{/task}} | ||
| 119 | |||
| 120 | {{task reference="/Tasks/Task_34" status="InProgress"}} | ||
| 121 | create conda env with flashh5 | ||
| 122 | {{/task}} | ||
| 123 | ))) | ||
| 124 | {{/task}} | ||
| 125 | ))) | ||
| 126 | |||
| 127 | \\ | ||
| 128 | |||
| 129 | \\ | ||
| 130 | |||
| 131 | ---- | ||
| 132 | |||
| 133 | ==== under review ==== | ||
| 134 | |||
| 135 | \\ | ||
| 136 | |||
| 137 | {{code language="bash"}} | ||
| 138 | conda create -n flashh5 python=3.10 # 3.10 not necessary, but would prefer 3.8 or higher | ||
| 139 | source activate flashh5 | ||
| 140 | conda install ipython numpy pandas #TODO: fix dependcies | ||
| 141 | conda install -c https://www.desy.de/~cpassow/condarepo/ flashh5 | ||
| 142 | |||
| 143 | ## on jhub | ||
| 144 | conda install ipykernel | ||
| 145 | python -m ipykernel install --user --name flashh5 --display-name "flashh5" | ||
| 146 | |||
| 147 | |||
| 148 | ## to remove on jhub | ||
| 149 | ## delete from: /home/$USER/.local/share/jupyter/kernels/ | ||
| 150 | {{/code}} | ||
| 151 | |||
| 152 | \\ | ||
| 153 | |||
| 154 | {{code language="py" title="moved to repository?"}} | ||
| 155 | class RunDirectory: | ||
| 156 | |||
| 157 | def get_run_table(): # more or less information? RunComment | Number of Files | start & stop time ? | ||
| 158 | ... | ||
| 159 | |||
| 160 | def get_run(daq, run_number): # daq is not needed! | ||
| 161 | |||
| 162 | ... | ||
| 163 | |||
| 164 | |||
| 165 | class Run: # constructor optional without RunDirectory or use there self.path | ||
| 166 | |||
| 167 | def get_files(): | ||
| 168 | ... | ||
| 169 | |||
| 170 | def get_channels(): # of file #1 | ||
| 171 | ... | ||
| 172 | |||
| 173 | def get_start_time(): # better as attribute? | ||
| 174 | ... | ||
| 175 | |||
| 176 | def get_stop_time(): # which? | better as attribute? | ||
| 177 | ... | ||
| 178 | |||
| 179 | def to_df(daq_map): # to_df(daq_map, slice) slice=[0:4] -> throw Exception | ||
| 180 | ... | ||
| 181 | |||
| 182 | def to_series(channel): | ||
| 183 | ... | ||
| 184 | |||
| 185 | def to_array(channel): | ||
| 186 | ... | ||
| 187 | {{/code}} | ||
| 188 | |||
| 189 | {{code language="py" title="ideas"}} | ||
| 190 | run.to_df(daq_map) | ||
| 191 | run.to_series(daq_adr or daq_map) # on channel only? | ||
| 192 | run.to_array(daq_adr) # on channel only? | ||
| 193 | |||
| 194 | ## interesting? | ||
| 195 | # run.to_dask(daq_map) | ||
| 196 | # run.to_xarray(daq_map) | ||
| 197 | {{/code}} | ||
| 198 | |||
| 199 | \\ |