DEMO - Working with FLASH data

author	version	line-number	content
		1	test
		2
		3	\\
		4
		5	{{expand}}
		6
		7
		8	{{view-file att--filename="tmp.mp4" height="250"/}}
		9	{{/expand}}
		10
		11	\\
		12
		13	\\
		14
		15	----
		16
		17	=== TODO ===
		18
		19	(% class="task-list" %)
		20	(((
		21	{{task reference="/Tasks/Task_18" status="InProgress"}}
		22	Short descriptions including Links: → as Text\\
		23
		24	(% class="task-list" %)
		25	(((
		26
		27
		28	{{task reference="/Tasks/Task_19" status="InProgress"}}
		29	GPFS
		30	{{/task}}
		31
		32	{{task reference="/Tasks/Task_20" status="InProgress"}}
		33	JupyterHub
		34	{{/task}}
		35
		36	{{task reference="/Tasks/Task_21" status="InProgress"}}
		37	conda ?
		38	{{/task}}
		39
		40	{{task reference="/Tasks/Task_36" status="InProgress"}}
		41	explain install from channel instead of fixed environment, but can use environment file from example repository
		42	{{/task}}
		43	)))
		44	{{/task}}
		45	)))
		46
		47	\\
		48
		49	(% class="task-list" %)
		50	(((
		51	{{task reference="/Tasks/Task_22" status="InProgress"}}
		52	distribution
		53
		54	(% class="task-list" %)
		55	(((
		56
		57
		58	{{task reference="/Tasks/Task_23" status="InProgress"}}
		59	channel (where to host?)
		60	{{/task}}
		61
		62	{{task reference="/Tasks/Task_24" status="InProgress"}}
		63	environment file (repository with examples)
		64	{{/task}}
		65	)))
		66	{{/task}}
		67	)))
		68
		69	\\
		70
		71	(% class="task-list" %)
		72	(((
		73	{{task reference="/Tasks/Task_25" status="InProgress"}}
		74	Documentation
		75
		76	(% class="task-list" %)
		77	(((
		78
		79
		80	{{task reference="/Tasks/Task_26" status="InProgress"}}
		81	here VS repository VS sphinx
		82	{{/task}}
		83	)))
		84	{{/task}}
		85	)))
		86
		87	\\
		88
		89	(% class="task-list" %)
		90	(((
		91	{{task reference="/Tasks/Task_27" status="InProgress"}}
		92	Binder
		93
		94	(% class="task-list" %)
		95	(((
		96
		97
		98	{{task reference="/Tasks/Task_28" status="InProgress"}}
		99	examples with Stefan
		100	{{/task}}
		101	)))
		102	{{/task}}
		103	)))
		104
		105	\\
		106
		107	(% class="task-list" %)
		108	(((
		109	{{task reference="/Tasks/Task_29" status="InProgress"}}
		110	Screencast
		111
		112	(% class="task-list" %)
		113	(((
		114
		115
		116	{{task reference="/Tasks/Task_30" status="InProgress"}}
		117	login in jupyter hub
		118	{{/task}}
		119
		120	{{task reference="/Tasks/Task_31" status="InProgress"}}
		121	login maxwell display
		122	{{/task}}
		123
		124	{{task reference="/Tasks/Task_32" status="InProgress"}}
		125	use slix
		126	{{/task}}
		127
		128	{{task reference="/Tasks/Task_33" status="InProgress"}}
		129	use hdfview plugin in jupterLab
		130	{{/task}}
		131
		132	{{task reference="/Tasks/Task_34" status="InProgress"}}
		133	create conda env with flashh5
		134	{{/task}}
		135	)))
		136	{{/task}}
		137	)))
		138
		139	\\
		140
		141	\\
		142
		143	----
		144
		145	==== under review ====
		146
		147	\\
		148
		149	{{code language="bash"}}
		150	conda create -n flashh5 python=3.10 # 3.10 not necessary, but would prefer 3.8 or higher
		151	source activate flashh5
		152	conda install ipython numpy pandas #TODO: fix dependcies
		153	conda install -c https://www.desy.de/~cpassow/condarepo/ flashh5
		154
		155	## on jhub
		156	conda install ipykernel
		157	python -m ipykernel install --user --name flashh5 --display-name "flashh5"
		158
		159
		160	## to remove on jhub
		161	## delete from: /home/$USER/.local/share/jupyter/kernels/
		162	{{/code}}
		163
		164	\\
		165
		166	{{code language="py" title="moved to repository?"}}
		167	class RunDirectory:
		168
		169	def get_run_table(): # more or less information? RunComment \| Number of Files \| start & stop time ?
		170	...
		171
		172	def get_run(daq, run_number): # daq is not needed!
		173
		174	...
		175
		176
		177	class Run: # constructor optional without RunDirectory or use there self.path
		178
		179	def get_files():
		180	...
		181
		182	def get_channels(): # of file #1
		183	...
		184
		185	def get_start_time(): # better as attribute?
		186	...
		187
		188	def get_stop_time(): # which? \| better as attribute?
		189	...
		190
		191	def to_df(daq_map): # to_df(daq_map, slice) slice=[0:4] -> throw Exception
		192	...
		193
		194	def to_series(channel):
		195	...
		196
		197	def to_array(channel):
		198	...
		199	{{/code}}
		200
		201	{{code language="py" title="ideas"}}
		202	run.to_df(daq_map)
		203	run.to_series(daq_adr or daq_map) # on channel only?
		204	run.to_array(daq_adr) # on channel only?
		205
		206	## interesting?
		207	# run.to_dask(daq_map)
		208	# run.to_xarray(daq_map)
		209	{{/code}}
		210
		211	\\

Wiki source code of DEMO - Working with FLASH data