DEMO - Working with FLASH data

author	version	line-number	content
		1	test
		2
		3	\\
		4
		5	{{expand title="TEST - How to login JupyterHub"}}
		6
		7
		8	{{view-file att--filename="tmp.mp4" height="250"/}}
		9	{{/expand}}
		10
		11	\\
		12
		13	\\
		14
		15	----
		16
		17	=== TODO ===
		18
		19	(% class="task-list" %)
		20	(((
		21	{{task reference="/Tasks/Task_18" status="InProgress"}}
		22	Short descriptions including Links: → as Text\\
		23
		24	(% class="task-list" %)
		25	(((
		26
		27
		28	{{task reference="/Tasks/Task_19" status="InProgress"}}
		29	GPFS
		30	{{/task}}
		31
		32	{{task reference="/Tasks/Task_40" status="InProgress"}}
		33	Access rights
		34	{{/task}}
		35
		36	{{task reference="/Tasks/Task_41" status="InProgress"}}
		37	Gamma Portal
		38	{{/task}}
		39
		40	{{task reference="/Tasks/Task_42" status="InProgress"}}
		41	Maxwell
		42	{{/task}}
		43
		44	{{task reference="/Tasks/Task_20" status="InProgress"}}
		45	JupyterHub
		46	{{/task}}
		47
		48	{{task reference="/Tasks/Task_21" status="InProgress"}}
		49	conda ?
		50	{{/task}}
		51
		52	{{task reference="/Tasks/Task_36" status="InProgress"}}
		53	explain install from channel instead of fixed environment, but can use environment file from example repository
		54	{{/task}}
		55	)))
		56	{{/task}}
		57	)))
		58
		59	\\
		60
		61	(% class="task-list" %)
		62	(((
		63	{{task reference="/Tasks/Task_22" status="InProgress"}}
		64	distribution
		65
		66	(% class="task-list" %)
		67	(((
		68
		69
		70	{{task reference="/Tasks/Task_23" status="InProgress"}}
		71	channel (where to host?)
		72	{{/task}}
		73
		74	{{task reference="/Tasks/Task_24" status="InProgress"}}
		75	environment file (repository with examples)
		76	{{/task}}
		77	)))
		78	{{/task}}
		79	)))
		80
		81	\\
		82
		83	(% class="task-list" %)
		84	(((
		85	{{task reference="/Tasks/Task_25" status="InProgress"}}
		86	Documentation
		87
		88	(% class="task-list" %)
		89	(((
		90
		91
		92	{{task reference="/Tasks/Task_26" status="InProgress"}}
		93	here VS repository VS sphinx
		94	{{/task}}
		95	)))
		96	{{/task}}
		97	)))
		98
		99	\\
		100
		101	(% class="task-list" %)
		102	(((
		103	{{task reference="/Tasks/Task_27" status="InProgress"}}
		104	Binder
		105
		106	(% class="task-list" %)
		107	(((
		108
		109
		110	{{task reference="/Tasks/Task_28" status="InProgress"}}
		111	examples with Stefan
		112	{{/task}}
		113	)))
		114	{{/task}}
		115	)))
		116
		117	\\
		118
		119	(% class="task-list" %)
		120	(((
		121	{{task reference="/Tasks/Task_29" status="InProgress"}}
		122	Screencast
		123
		124	(% class="task-list" %)
		125	(((
		126
		127
		128	{{task reference="/Tasks/Task_30" status="InProgress"}}
		129	login in jupyter hub
		130	{{/task}}
		131
		132	{{task reference="/Tasks/Task_31" status="InProgress"}}
		133	login maxwell display
		134	{{/task}}
		135
		136	{{task reference="/Tasks/Task_32" status="InProgress"}}
		137	use slix
		138	{{/task}}
		139
		140	{{task reference="/Tasks/Task_33" status="InProgress"}}
		141	use hdfview plugin in jupterLab
		142	{{/task}}
		143
		144	{{task reference="/Tasks/Task_34" status="InProgress"}}
		145	create conda env with flashh5
		146	{{/task}}
		147	)))
		148	{{/task}}
		149	)))
		150
		151	\\
		152
		153	\\
		154
		155	----
		156
		157	==== under review ====
		158
		159	\\
		160
		161	{{code language="bash"}}
		162	conda create -n flashh5 python=3.10 # 3.10 not necessary, but would prefer 3.8 or higher
		163	source activate flashh5
		164	conda install ipython numpy pandas #TODO: fix dependcies
		165	conda install -c https://www.desy.de/~cpassow/condarepo/ flashh5
		166
		167	## on jhub
		168	conda install ipykernel
		169	python -m ipykernel install --user --name flashh5 --display-name "flashh5"
		170
		171
		172	## to remove on jhub
		173	## delete from: /home/$USER/.local/share/jupyter/kernels/
		174	{{/code}}
		175
		176	\\
		177
		178	{{code language="py" title="moved to repository?"}}
		179	class RunDirectory:
		180
		181	def get_run_table(): # more or less information? RunComment \| Number of Files \| start & stop time ?
		182	...
		183
		184	def get_run(daq, run_number): # daq is not needed!
		185
		186	...
		187
		188
		189	class Run: # constructor optional without RunDirectory or use there self.path
		190
		191	def get_files():
		192	...
		193
		194	def get_channels(): # of file #1
		195	...
		196
		197	def get_start_time(): # better as attribute?
		198	...
		199
		200	def get_stop_time(): # which? \| better as attribute?
		201	...
		202
		203	def to_df(daq_map): # to_df(daq_map, slice) slice=[0:4] -> throw Exception
		204	...
		205
		206	def to_series(channel):
		207	...
		208
		209	def to_array(channel):
		210	...
		211	{{/code}}
		212
		213	{{code language="py" title="ideas"}}
		214	run.to_df(daq_map)
		215	run.to_series(daq_adr or daq_map) # on channel only?
		216	run.to_array(daq_adr) # on channel only?
		217
		218	## interesting?
		219	# run.to_dask(daq_map)
		220	# run.to_xarray(daq_map)
		221	{{/code}}
		222
		223	\\