Changes for page SciCat - Scientific Metadata Management at DESY
Last modified by rkwee on 2026-02-16 11:45
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... ... @@ -4,30 +4,48 @@ 4 4 5 5 The challenge in photon and neutron science is to find a standard way of naming characteristics for a huge variety of experiments at beamlines, interconnecting several fields like chemistry, material science, biology, medicine, etc – covering many aspects that influences daily life. Apart from the "normal" physics research there are various other types of research depending on the purpose one can perform at DESY: inhouse, commissioning, industries. In additon, there are differences from PetraIII and FLASH within photon science. All this is reflected in the different treatment of the data taken. 6 6 7 -One of SciCats strengths is that technically one can impose your own schema, the fields to describe your use case. These pagesdescribe thecurrent state ofSciCat.Theultimate goalis tohave aproductionsystem ofSciCatthatservesallbeamlines.7 +One of SciCats strengths is that technically one can impose your own schema, the fields to describe your use case. Many efforts were made at the European scope to use standardised vocabulary such that scientific metadata can be gathered and made findable, accessible and interoperable at first and ultimately reusable, eg. in NFDI and EOSC framed projects. DESY's SciCat system follows those standards. 8 8 9 -To gain experience so-called _demonstrator beamlines_ where chosen, in 2021 when SciCat was chosen at DESY to be tested. These w: P08 and FLASH. In addition serveral other have been added, see [SciCat Instances](https://xwiki.desy.de/xwiki/bin/view/IT/SciCat/CICD%20Setup/). These help to identify missing features and adopt SciCat to DESY needs.9 +To gain experience so-called _demonstrator beamlines_ where chosen, in 2021 when SciCat was chosen at DESY to be tested. These were: P08 and FLASH. In the next two following years, serveral other have been added, see [SciCat Instances](https://xwiki.desy.de/xwiki/bin/view/IT/SciCat/CICD%20Setup/). These helped to identify missing features and adopt SciCat to DESY needs. 10 10 11 -### Current stateof SciCat at DESY11 +### Goals for SciCat at DESY 12 12 13 - Beamlineingestion hasbeen streamlinedsuchthatthere isone single cataloguefor allDESYbeamlines.13 +Goal number one is to provide a useful catalogue to the user at DESY. Useful means - among others - 14 14 15 -### 15 +* Introduce standardised way of defining meta data, FS-EC (under Linus Pithan). 16 +* Use SciCat to help book keeping of what was measured which also helps planning new research studies. 17 +* Use SciCat to issue DOIs: Together with the DESY library develop detailed workflow to help the user make data publication. 18 +* Use SciCat to provide access to experimental data that comply with DESY photon science data Policy and can be made available through DESY resources. 16 16 20 +### Milestone achieved by January 2026: 21 + 22 +Set up of the system to mint DOIs. 23 + 17 17 ## Step by step guide for the Photon Science DOI minting Service 18 18 26 +The system is set up such that an internal and public, outward facing SciCat is provided. Into the internal, several PETRA beamlines ingest directly their metadata during beamtime that are P08, P05, P65. The URL is 27 + 28 +[scicat.desy.de](https://scicat.desy.de), it has already more then 100,000 dataset entries where one of them has 160,000 associated datafiles (Feb 2026). It is MFA protected but single sign on is available through keykloak . 29 + 30 +It is connected to the external catalogue, fsdata.desy.de, on which DOIs can be minted for selected datasets from the internal catalogue. 31 + 19 19 {{success}} 20 -A detailed desciption of how to mint a DOI for your data is described on this [[page|doc:IT.SciCat.Step-by-step DOI minting Guide at DESY.WebHome]]. 33 +A detailed description of how to mint a DOI for your data is described on this [[page|doc:IT.SciCat.Step-by-step DOI minting Guide at DESY.WebHome]]. 21 21 {{/success}} 22 22 23 -### Goalsfor SciCat at DESY36 +### 24 24 25 - Goalnumberoneistoprovide a usefulcatalogueto the userat DESY. Useful means - among others -38 +## Deployment of SciCat at DESY 26 26 27 -* introduce standardised way of defining meta data, FS-EC (under Linus Pithan) 28 -* use SciCat to issue DOIs: in agreement with L start setting up a workflow (involved IT-RIC Tim W) 29 -* provide technical support for instances (IT-InFa) 40 +This service is deployed on a Kubernetes cluster, managed and configured by gitlab repositories for 30 30 42 +* templated helm charts for better maintainability 43 +* a mirror of official repositoro 44 + 45 +### 46 + 47 +### Current 48 + 31 31 ### Main Links: 32 32 33 33 * [Official Scicat website](https://scicatproject.github.io)