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Last modified by flenners on 2025-06-24 16:56
From version 1.1
edited by flenners
on 2021-04-27 14:20
Change comment: There is no comment for this version
To version 11.1
edited by greving
on 2021-10-26 11:23
Change comment: There is no comment for this version

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Title
... ... @@ -1,1 +1,1 @@
1 -Reconstruction Guideline
1 +02 - How to login to Maxwell and start RecoGUI
Author
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1 -XWiki.flenners
1 +XWiki.greving
Content
... ... @@ -2,15 +2,31 @@
2 2  
3 3  Terminal:
4 4  
5 -salloc ~-~-partition=all ~-~-nodes=1 –time=06:00:00
5 +(% class="code" %)
6 +(((
7 +salloc ~-~-partition=psx ~-~-nodes=1 –-time=06:00:00
8 +\\(if you need gpu: (% class="bash plain" %){{code language="none"}}--constraint=P100{{/code}}(%%) )
9 +\\ssh max-bla123
10 +\\module load anaconda
11 +\\source activate ~~/envs/tomopy
12 +\\spyder&
13 +)))
6 6  
15 +\\
16 +
17 +\\
18 +
19 +{{code linenumbers="true" collapse="true"}}
20 +salloc --partition=psx --nodes=1 –-time=06:00:00
21 +
7 7  ssh max-bla123
8 8  
9 9  module load anaconda
10 10  
11 -source activate ~~/envs/tomopy
26 +source activate ~/envs/tomopy
12 12  
13 13  spyder&
29 +{{/code}}
14 14  
15 15  \\
16 16  
... ... @@ -48,7 +48,7 @@
48 48  
49 49  (% class="code" %)
50 50  (((
51 -salloc ~-~-partition=all ~-~-nodes=1 ~-~-time=06:00:00
67 +salloc ~-~-partition=psx ~-~-nodes=1 ~-~-time=06:00:00
52 52  )))
53 53  
54 54  \\
... ... @@ -74,18 +74,71 @@
74 74  
75 75  [[image:attach:image2021-4-27_13-52-11.png||height="125"]]
76 76  
93 +Hint: Please use partition=psx, if you use =all, the connection might close while you are working if someone with higher priority needs the node you are working on.
94 +
77 77  \\
78 78  
97 +Now you are on a different node [[image:http://confluence.desy.de/s/de_DE/7901/4635873c8e185dc5df37b4e2487dfbef570b5e2c/_/images/icons/emoticons/smile.svg||title="(Lächeln)" border="0" class="emoticon emoticon-smile"]].
98 +
79 79  \\
80 80  
81 -Now you are on a different node 🙂️.
101 +You first have to **load the anaconda module:**
82 82  
83 -You can also start another terminal e.g. if you want to 
103 +(% class="code" %)
104 +(((
105 +module load anaconda/3
106 +\\
107 +)))
84 84  
85 -And
109 +and **activate your virtual environment**, depending on where you installed it:
86 86  
111 +(% class="code" %)
112 +(((
113 +source activate ~~/envs/tomopy
114 +)))
115 +
116 +\\
117 +
118 +~~/ takes you back to your home directory. In this case, the environment "tomopy" was installed in the home directory in the folder "envs". 
119 +
120 +\\
121 +
122 +now you can **start spyder**:
123 +
124 +(% class="code" %)
125 +(((
126 +spyder&
127 +)))
128 +
129 +\\
130 +
131 +EXAMPLE: (virtual environment in "envs/p36"
132 +
87 87  [[image:attach:image2021-4-27_13-53-35.png||height="71"]]
88 88  
89 89  \\
90 90  
91 -1. [[image:attach:image2021-4-27_13-51-12.png||thumbnail="true" height="250"]]
137 +You can also start another terminal e.g. if you want to look at your data / reconstructions in fiji.
138 +
139 +\\
140 +
141 +Hint: You can check your partition via
142 +
143 +(% class="code" %)
144 +(((
145 +my-partitions
146 +)))
147 +
148 +You should have access to psx.
149 +
150 +[[image:attach:image2021-5-4_10-28-14.png]]
151 +
152 +\\
153 +
154 +For further information also check:
155 +
156 +[[doc:IS.Maxwell.WebHome]]
157 +
158 +\\
159 +
160 +\\
Confluence.Code.ConfluencePageClass[0]
Id
... ... @@ -1,1 +1,1 @@
1 -204941686
1 +235027533
Title
... ... @@ -1,1 +1,1 @@
1 -Reconstruction Guideline
1 +02 - How to login to Maxwell and start RecoGUI
URL
... ... @@ -1,1 +1,1 @@
1 -https://confluence.desy.de/spaces/P5I/pages/204941686/Reconstruction Guideline
1 +https://confluence.desy.de/spaces/P5I/pages/235027533/02 - How to login to Maxwell and start RecoGUI