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Last modified by flenners on 2025-06-24 16:56
From version 11.1
edited by greving
on 2021-10-26 11:23
Change comment: There is no comment for this version
To version 1.1
edited by flenners
on 2021-04-27 14:20
Change comment: There is no comment for this version

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Title
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1 -02 - How to login to Maxwell and start RecoGUI
1 +Reconstruction Guideline
Author
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1 -XWiki.greving
1 +XWiki.flenners
Content
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2 2  
3 3  Terminal:
4 4  
5 -(% class="code" %)
6 -(((
7 -salloc ~-~-partition=psx ~-~-nodes=1 –-time=06:00:00
8 -\\(if you need gpu: (% class="bash plain" %){{code language="none"}}--constraint=P100{{/code}}(%%) )
9 -\\ssh max-bla123
10 -\\module load anaconda
11 -\\source activate ~~/envs/tomopy
12 -\\spyder&
13 -)))
5 +salloc ~-~-partition=all ~-~-nodes=1 –time=06:00:00
14 14  
15 -\\
16 -
17 -\\
18 -
19 -{{code linenumbers="true" collapse="true"}}
20 -salloc --partition=psx --nodes=1 –-time=06:00:00
21 -
22 22  ssh max-bla123
23 23  
24 24  module load anaconda
25 25  
26 -source activate ~/envs/tomopy
11 +source activate ~~/envs/tomopy
27 27  
28 28  spyder&
29 -{{/code}}
30 30  
31 31  \\
32 32  
... ... @@ -64,7 +64,7 @@
64 64  
65 65  (% class="code" %)
66 66  (((
67 -salloc ~-~-partition=psx ~-~-nodes=1 ~-~-time=06:00:00
51 +salloc ~-~-partition=all ~-~-nodes=1 ~-~-time=06:00:00
68 68  )))
69 69  
70 70  \\
... ... @@ -90,71 +90,18 @@
90 90  
91 91  [[image:attach:image2021-4-27_13-52-11.png||height="125"]]
92 92  
93 -Hint: Please use partition=psx, if you use =all, the connection might close while you are working if someone with higher priority needs the node you are working on.
94 -
95 95  \\
96 96  
97 -Now you are on a different node [[image:http://confluence.desy.de/s/de_DE/7901/4635873c8e185dc5df37b4e2487dfbef570b5e2c/_/images/icons/emoticons/smile.svg||title="(Lächeln)" border="0" class="emoticon emoticon-smile"]].
98 -
99 99  \\
100 100  
101 -You first have to **load the anaconda module:**
81 +Now you are on a different node 🙂️.
102 102  
103 -(% class="code" %)
104 -(((
105 -module load anaconda/3
106 -\\
107 -)))
83 +You can also start another terminal e.g. if you want to 
108 108  
109 -and **activate your virtual environment**, depending on where you installed it:
85 +And
110 110  
111 -(% class="code" %)
112 -(((
113 -source activate ~~/envs/tomopy
114 -)))
115 -
116 -\\
117 -
118 -~~/ takes you back to your home directory. In this case, the environment "tomopy" was installed in the home directory in the folder "envs". 
119 -
120 -\\
121 -
122 -now you can **start spyder**:
123 -
124 -(% class="code" %)
125 -(((
126 -spyder&
127 -)))
128 -
129 -\\
130 -
131 -EXAMPLE: (virtual environment in "envs/p36"
132 -
133 133  [[image:attach:image2021-4-27_13-53-35.png||height="71"]]
134 134  
135 135  \\
136 136  
137 -You can also start another terminal e.g. if you want to look at your data / reconstructions in fiji.
138 -
139 -\\
140 -
141 -Hint: You can check your partition via
142 -
143 -(% class="code" %)
144 -(((
145 -my-partitions
146 -)))
147 -
148 -You should have access to psx.
149 -
150 -[[image:attach:image2021-5-4_10-28-14.png]]
151 -
152 -\\
153 -
154 -For further information also check:
155 -
156 -[[doc:IS.Maxwell.WebHome]]
157 -
158 -\\
159 -
160 -\\
91 +1. [[image:attach:image2021-4-27_13-51-12.png||thumbnail="true" height="250"]]
Confluence.Code.ConfluencePageClass[0]
Id
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1 -235027533
1 +204941686
Title
... ... @@ -1,1 +1,1 @@
1 -02 - How to login to Maxwell and start RecoGUI
1 +Reconstruction Guideline
URL
... ... @@ -1,1 +1,1 @@
1 -https://confluence.desy.de/spaces/P5I/pages/235027533/02 - How to login to Maxwell and start RecoGUI
1 +https://confluence.desy.de/spaces/P5I/pages/204941686/Reconstruction Guideline