Changes for page 00 - How to login to Maxwell
Last modified by flenners on 2025-06-24 16:56
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... ... @@ -205,96 +205,8 @@ 205 205 206 206 If you have to add other users to a past beamtime, this can be done via the gamma-portal. After adding the accounts, these people have to make sure to log off from **all **FastX sessions, etc. to update the permissions. 207 207 208 -= {{id name="00-HowtologintoMaxwell-StartingarecoGUI"/}}Starting a reco GUI = 209 - 210 -== {{id name="00-HowtologintoMaxwell-ShortVersion:"/}}Short Version: == 211 - 212 -Terminal: 213 - 214 -(% class="code" %) 215 -((( 216 -salloc ~-~-partition=psx ~-~-nodes=1 –-time=06:00:00 217 -\\(if you need gpu: (% class="bash plain" %){{code language="none"}}--constraint=P100{{/code}}(%%) ) 218 -\\ssh max-bla123 219 -\\module load anaconda/3 220 -\\source activate ~~/envs/tomopy 221 -\\spyder& 222 -))) 223 - 224 224 \\ 225 225 226 226 \\ 227 227 228 -{{code linenumbers="true" collapse="true"}} 229 -salloc --partition=psx --nodes=1 –-time=06:00:00 230 - 231 -ssh max-bla123 232 - 233 -module load anaconda/3 234 - 235 -source activate ~/envs/tomopy 236 - 237 -spyder& 238 -{{/code}} 239 - 240 240 \\ 241 - 242 -Spyder: 243 - 244 -Open RecoGUI, 245 - 246 -(Right click on tab: "Set console working directory") (to be removed) 247 - 248 -Green Arrow to start program 249 - 250 -\\ 251 - 252 -== {{id name="00-HowtologintoMaxwell-LongerVersion"/}}Longer Version == 253 - 254 -\\ 255 - 256 -Login to maxwell and allocate a node from the psx partition. 257 - 258 -\\ 259 - 260 -You first have to **load the anaconda module:** 261 - 262 -(% class="code" %) 263 -((( 264 -module load anaconda/3 265 -\\ 266 -))) 267 - 268 -and **activate your virtual environment**, depending on where you installed it: 269 - 270 -(% class="code" %) 271 -((( 272 -source activate ~~/envs/tomopy 273 -))) 274 - 275 -\\ 276 - 277 -~~/ takes you back to your home directory. In this case, the environment "tomopy" was installed in the home directory in the folder "envs". 278 - 279 -\\ 280 - 281 -now you can **start spyder**: 282 - 283 -(% class="code" %) 284 -((( 285 -spyder& 286 -))) 287 - 288 -\\ 289 - 290 -EXAMPLE: (virtual environment in "envs/p36" 291 - 292 -[[image:attach:image2021-4-27_13-53-35.png||height="71"]] 293 - 294 -\\ 295 - 296 -You can also start another terminal e.g. if you want to look at your data / reconstructions in fiji. 297 - 298 -\\ 299 - 300 -\\
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... ... @@ -1,1 +1,1 @@ 1 -https://confluence.desy.de/spaces/P5I/pages/25 0168659/00 - How to login to Maxwell1 +https://confluence.desy.de/spaces/P5I/pages/256492698/00 - How to login to Maxwell