Changes for page 00 - How to login to Maxwell
Last modified by flenners on 2025-06-24 16:56
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... ... @@ -205,8 +205,96 @@ 205 205 206 206 If you have to add other users to a past beamtime, this can be done via the gamma-portal. After adding the accounts, these people have to make sure to log off from **all **FastX sessions, etc. to update the permissions. 207 207 208 += {{id name="00-HowtologintoMaxwell-StartingarecoGUI"/}}Starting a reco GUI = 209 + 210 +== {{id name="00-HowtologintoMaxwell-ShortVersion:"/}}Short Version: == 211 + 212 +Terminal: 213 + 214 +(% class="code" %) 215 +((( 216 +salloc ~-~-partition=psx ~-~-nodes=1 –-time=06:00:00 217 +\\(if you need gpu: (% class="bash plain" %){{code language="none"}}--constraint=P100{{/code}}(%%) ) 218 +\\ssh max-bla123 219 +\\module load anaconda/3 220 +\\source activate ~~/envs/tomopy 221 +\\spyder& 222 +))) 223 + 208 208 \\ 209 209 210 210 \\ 211 211 228 +{{code linenumbers="true" collapse="true"}} 229 +salloc --partition=psx --nodes=1 –-time=06:00:00 230 + 231 +ssh max-bla123 232 + 233 +module load anaconda/3 234 + 235 +source activate ~/envs/tomopy 236 + 237 +spyder& 238 +{{/code}} 239 + 212 212 \\ 241 + 242 +Spyder: 243 + 244 +Open RecoGUI, 245 + 246 +(Right click on tab: "Set console working directory") (to be removed) 247 + 248 +Green Arrow to start program 249 + 250 +\\ 251 + 252 +== {{id name="00-HowtologintoMaxwell-LongerVersion"/}}Longer Version == 253 + 254 +\\ 255 + 256 +Login to maxwell and allocate a node from the psx partition. 257 + 258 +\\ 259 + 260 +You first have to **load the anaconda module:** 261 + 262 +(% class="code" %) 263 +((( 264 +module load anaconda/3 265 +\\ 266 +))) 267 + 268 +and **activate your virtual environment**, depending on where you installed it: 269 + 270 +(% class="code" %) 271 +((( 272 +source activate ~~/envs/tomopy 273 +))) 274 + 275 +\\ 276 + 277 +~~/ takes you back to your home directory. In this case, the environment "tomopy" was installed in the home directory in the folder "envs". 278 + 279 +\\ 280 + 281 +now you can **start spyder**: 282 + 283 +(% class="code" %) 284 +((( 285 +spyder& 286 +))) 287 + 288 +\\ 289 + 290 +EXAMPLE: (virtual environment in "envs/p36" 291 + 292 +[[image:attach:image2021-4-27_13-53-35.png||height="71"]] 293 + 294 +\\ 295 + 296 +You can also start another terminal e.g. if you want to look at your data / reconstructions in fiji. 297 + 298 +\\ 299 + 300 +\\
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... ... @@ -1,1 +1,1 @@ 1 -https://confluence.desy.de/spaces/P5I/pages/256 492698/00 - How to login to Maxwell1 +https://confluence.desy.de/spaces/P5I/pages/250168659/00 - How to login to Maxwell