Skip to Content
Last modified by flenners on 2025-06-24 16:56
From version 2.1
edited by flenners
on 2021-04-27 14:21
Change comment: There is no comment for this version
To version 11.1
edited by greving
on 2021-10-26 11:23
Change comment: There is no comment for this version

Summary

Details

Page properties
Title
... ... @@ -1,1 +1,1 @@
1 -How to start the RecoGUI
1 +02 - How to login to Maxwell and start RecoGUI
Author
... ... @@ -1,1 +1,1 @@
1 -XWiki.flenners
1 +XWiki.greving
Content
... ... @@ -2,15 +2,31 @@
2 2  
3 3  Terminal:
4 4  
5 -salloc ~-~-partition=all ~-~-nodes=1 –time=06:00:00
5 +(% class="code" %)
6 +(((
7 +salloc ~-~-partition=psx ~-~-nodes=1 –-time=06:00:00
8 +\\(if you need gpu: (% class="bash plain" %){{code language="none"}}--constraint=P100{{/code}}(%%) )
9 +\\ssh max-bla123
10 +\\module load anaconda
11 +\\source activate ~~/envs/tomopy
12 +\\spyder&
13 +)))
6 6  
15 +\\
16 +
17 +\\
18 +
19 +{{code linenumbers="true" collapse="true"}}
20 +salloc --partition=psx --nodes=1 –-time=06:00:00
21 +
7 7  ssh max-bla123
8 8  
9 9  module load anaconda
10 10  
11 -source activate ~~/envs/tomopy
26 +source activate ~/envs/tomopy
12 12  
13 13  spyder&
29 +{{/code}}
14 14  
15 15  \\
16 16  
... ... @@ -48,7 +48,7 @@
48 48  
49 49  (% class="code" %)
50 50  (((
51 -salloc ~-~-partition=all ~-~-nodes=1 ~-~-time=06:00:00
67 +salloc ~-~-partition=psx ~-~-nodes=1 ~-~-time=06:00:00
52 52  )))
53 53  
54 54  \\
... ... @@ -74,18 +74,71 @@
74 74  
75 75  [[image:attach:image2021-4-27_13-52-11.png||height="125"]]
76 76  
77 -\\
93 +Hint: Please use partition=psx, if you use =all, the connection might close while you are working if someone with higher priority needs the node you are working on.
78 78  
79 79  \\
80 80  
81 81  Now you are on a different node [[image:http://confluence.desy.de/s/de_DE/7901/4635873c8e185dc5df37b4e2487dfbef570b5e2c/_/images/icons/emoticons/smile.svg||title="(Lächeln)" border="0" class="emoticon emoticon-smile"]].
82 82  
83 -You can also start another terminal e.g. if you want to 
99 +\\
84 84  
85 -And
101 +You first have to **load the anaconda module:**
86 86  
103 +(% class="code" %)
104 +(((
105 +module load anaconda/3
106 +\\
107 +)))
108 +
109 +and **activate your virtual environment**, depending on where you installed it:
110 +
111 +(% class="code" %)
112 +(((
113 +source activate ~~/envs/tomopy
114 +)))
115 +
116 +\\
117 +
118 +~~/ takes you back to your home directory. In this case, the environment "tomopy" was installed in the home directory in the folder "envs". 
119 +
120 +\\
121 +
122 +now you can **start spyder**:
123 +
124 +(% class="code" %)
125 +(((
126 +spyder&
127 +)))
128 +
129 +\\
130 +
131 +EXAMPLE: (virtual environment in "envs/p36"
132 +
87 87  [[image:attach:image2021-4-27_13-53-35.png||height="71"]]
88 88  
89 89  \\
90 90  
91 -1. [[image:attach:image2021-4-27_13-51-12.png||thumbnail="true" height="250"]]
137 +You can also start another terminal e.g. if you want to look at your data / reconstructions in fiji.
138 +
139 +\\
140 +
141 +Hint: You can check your partition via
142 +
143 +(% class="code" %)
144 +(((
145 +my-partitions
146 +)))
147 +
148 +You should have access to psx.
149 +
150 +[[image:attach:image2021-5-4_10-28-14.png]]
151 +
152 +\\
153 +
154 +For further information also check:
155 +
156 +[[doc:IS.Maxwell.WebHome]]
157 +
158 +\\
159 +
160 +\\
Confluence.Code.ConfluencePageClass[0]
Id
... ... @@ -1,1 +1,1 @@
1 -204941707
1 +235027533
Title
... ... @@ -1,1 +1,1 @@
1 -How to start the RecoGUI
1 +02 - How to login to Maxwell and start RecoGUI
URL
... ... @@ -1,1 +1,1 @@
1 -https://confluence.desy.de/spaces/P5I/pages/204941707/How to start the RecoGUI
1 +https://confluence.desy.de/spaces/P5I/pages/235027533/02 - How to login to Maxwell and start RecoGUI