Skip to Content
Last modified by flenners on 2025-06-24 16:56
From version 2.1
edited by flenners
on 2021-04-27 14:21
Change comment: There is no comment for this version
To version 3.1
edited by flenners
on 2021-04-27 14:29
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -2,16 +2,15 @@
2 2  
3 3  Terminal:
4 4  
5 +(% class="code" %)
6 +(((
5 5  salloc ~-~-partition=all ~-~-nodes=1 –time=06:00:00
8 +\\ssh max-bla123
9 +\\module load anaconda
10 +\\source activate ~~/envs/tomopy
11 +\\spyder&
12 +)))
6 6  
7 -ssh max-bla123
8 -
9 -module load anaconda
10 -
11 -source activate ~~/envs/tomopy
12 -
13 -spyder&
14 -
15 15  \\
16 16  
17 17  Spyder:
... ... @@ -80,12 +80,50 @@
80 80  
81 81  Now you are on a different node [[image:http://confluence.desy.de/s/de_DE/7901/4635873c8e185dc5df37b4e2487dfbef570b5e2c/_/images/icons/emoticons/smile.svg||title="(Lächeln)" border="0" class="emoticon emoticon-smile"]].
82 82  
83 -You can also start another terminal e.g. if you want to 
82 +\\
84 84  
85 -And
84 +You first have to **load the anaconda module:**
86 86  
86 +(% class="code" %)
87 +(((
88 +module load anaconda/3
89 +\\
90 +)))
91 +
92 +and **activate your virtual environment**, depending on where you installed it:
93 +
94 +(% class="code" %)
95 +(((
96 +source activate ~~/envs/tomopy
97 +)))
98 +
99 +\\
100 +
101 +~~/ takes you back to your home directory. In this case, the environment "tomopy" was installed in the home directory in the folder "envs". 
102 +
103 +\\
104 +
105 +now you can **start spyder**:
106 +
107 +(% class="code" %)
108 +(((
109 +spyder&
110 +)))
111 +
112 +\\
113 +
114 +EXAMPLE: (virtual environment in "envs/p36"
115 +
87 87  [[image:attach:image2021-4-27_13-53-35.png||height="71"]]
88 88  
89 89  \\
90 90  
91 -1. [[image:attach:image2021-4-27_13-51-12.png||thumbnail="true" height="250"]]
120 +You can also start another terminal e.g. if you want to look at your data / reconstructions in fiji.
121 +
122 +\\
123 +
124 +\\
125 +
126 +\\
127 +
128 +\\
Confluence.Code.ConfluencePageClass[0]
Id
... ... @@ -1,1 +1,1 @@
1 -204941707
1 +204941724
URL
... ... @@ -1,1 +1,1 @@
1 -https://confluence.desy.de/spaces/P5I/pages/204941707/How to start the RecoGUI
1 +https://confluence.desy.de/spaces/P5I/pages/204941724/How to start the RecoGUI