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Last modified by flenners on 2025-06-24 16:56
From version 2.1
edited by flenners
on 2021-04-27 14:21
Change comment: There is no comment for this version
To version 6.1
edited by flenners
on 2021-05-04 10:30
Change comment: There is no comment for this version

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2 2  
3 3  Terminal:
4 4  
5 -salloc ~-~-partition=all ~-~-nodes=1 –time=06:00:00
5 +(% class="code" %)
6 +(((
7 +salloc ~-~-partition=psx ~-~-nodes=1 –time=06:00:00
8 +\\ssh max-bla123
9 +\\module load anaconda
10 +\\source activate ~~/envs/tomopy
11 +\\spyder&
12 +)))
6 6  
14 +\\
15 +
16 +\\
17 +
18 +{{code linenumbers="true" collapse="true"}}
19 +salloc --partition=psx --nodes=1 –time=06:00:00
20 +
7 7  ssh max-bla123
8 8  
9 9  module load anaconda
10 10  
11 -source activate ~~/envs/tomopy
25 +source activate ~/envs/tomopy
12 12  
13 13  spyder&
28 +{{/code}}
14 14  
15 15  \\
16 16  
... ... @@ -48,7 +48,7 @@
48 48  
49 49  (% class="code" %)
50 50  (((
51 -salloc ~-~-partition=all ~-~-nodes=1 ~-~-time=06:00:00
66 +salloc ~-~-partition=psx ~-~-nodes=1 ~-~-time=06:00:00
52 52  )))
53 53  
54 54  \\
... ... @@ -74,18 +74,71 @@
74 74  
75 75  [[image:attach:image2021-4-27_13-52-11.png||height="125"]]
76 76  
77 -\\
92 +Hint: Please use partition=psx, if you use =all, the connection might close while you are working if someone with higher priority needs the node you are working on.
78 78  
79 79  \\
80 80  
81 81  Now you are on a different node [[image:http://confluence.desy.de/s/de_DE/7901/4635873c8e185dc5df37b4e2487dfbef570b5e2c/_/images/icons/emoticons/smile.svg||title="(Lächeln)" border="0" class="emoticon emoticon-smile"]].
82 82  
83 -You can also start another terminal e.g. if you want to 
98 +\\
84 84  
85 -And
100 +You first have to **load the anaconda module:**
86 86  
102 +(% class="code" %)
103 +(((
104 +module load anaconda/3
105 +\\
106 +)))
107 +
108 +and **activate your virtual environment**, depending on where you installed it:
109 +
110 +(% class="code" %)
111 +(((
112 +source activate ~~/envs/tomopy
113 +)))
114 +
115 +\\
116 +
117 +~~/ takes you back to your home directory. In this case, the environment "tomopy" was installed in the home directory in the folder "envs". 
118 +
119 +\\
120 +
121 +now you can **start spyder**:
122 +
123 +(% class="code" %)
124 +(((
125 +spyder&
126 +)))
127 +
128 +\\
129 +
130 +EXAMPLE: (virtual environment in "envs/p36"
131 +
87 87  [[image:attach:image2021-4-27_13-53-35.png||height="71"]]
88 88  
89 89  \\
90 90  
91 -1. [[image:attach:image2021-4-27_13-51-12.png||thumbnail="true" height="250"]]
136 +You can also start another terminal e.g. if you want to look at your data / reconstructions in fiji.
137 +
138 +\\
139 +
140 +Hint: You can check your partition via
141 +
142 +(% class="code" %)
143 +(((
144 +my-partitions
145 +)))
146 +
147 +You should have access to psx.
148 +
149 +[[image:attach:image2021-5-4_10-28-14.png]]
150 +
151 +\\
152 +
153 +For further information also check:
154 +
155 +[[doc:IS.Maxwell.WebHome]]
156 +
157 +\\
158 +
159 +\\
Confluence.Code.ConfluencePageClass[0]
Id
... ... @@ -1,1 +1,1 @@
1 -204941707
1 +206806131
URL
... ... @@ -1,1 +1,1 @@
1 -https://confluence.desy.de/spaces/P5I/pages/204941707/How to start the RecoGUI
1 +https://confluence.desy.de/spaces/P5I/pages/206806131/How to start the RecoGUI