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Last modified by flenners on 2025-06-24 16:56
From version 3.1
edited by flenners
on 2021-04-27 14:29
Change comment: There is no comment for this version
To version 1.1
edited by flenners
on 2021-04-27 14:20
Change comment: There is no comment for this version

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Page properties
Title
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1 -How to start the RecoGUI
1 +Reconstruction Guideline
Content
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2 2  
3 3  Terminal:
4 4  
5 -(% class="code" %)
6 -(((
7 7  salloc ~-~-partition=all ~-~-nodes=1 –time=06:00:00
8 -\\ssh max-bla123
9 -\\module load anaconda
10 -\\source activate ~~/envs/tomopy
11 -\\spyder&
12 -)))
13 13  
7 +ssh max-bla123
8 +
9 +module load anaconda
10 +
11 +source activate ~~/envs/tomopy
12 +
13 +spyder&
14 +
14 14  \\
15 15  
16 16  Spyder:
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77 77  
78 78  \\
79 79  
80 -Now you are on a different node [[image:http://confluence.desy.de/s/de_DE/7901/4635873c8e185dc5df37b4e2487dfbef570b5e2c/_/images/icons/emoticons/smile.svg||title="(Lächeln)" border="0" class="emoticon emoticon-smile"]].
81 +Now you are on a different node 🙂️.
81 81  
82 -\\
83 +You can also start another terminal e.g. if you want to 
83 83  
84 -You first have to **load the anaconda module:**
85 +And
85 85  
86 -(% class="code" %)
87 -(((
88 -module load anaconda/3
89 -\\
90 -)))
91 -
92 -and **activate your virtual environment**, depending on where you installed it:
93 -
94 -(% class="code" %)
95 -(((
96 -source activate ~~/envs/tomopy
97 -)))
98 -
99 -\\
100 -
101 -~~/ takes you back to your home directory. In this case, the environment "tomopy" was installed in the home directory in the folder "envs". 
102 -
103 -\\
104 -
105 -now you can **start spyder**:
106 -
107 -(% class="code" %)
108 -(((
109 -spyder&
110 -)))
111 -
112 -\\
113 -
114 -EXAMPLE: (virtual environment in "envs/p36"
115 -
116 116  [[image:attach:image2021-4-27_13-53-35.png||height="71"]]
117 117  
118 118  \\
119 119  
120 -You can also start another terminal e.g. if you want to look at your data / reconstructions in fiji.
121 -
122 -\\
123 -
124 -\\
125 -
126 -\\
127 -
128 -\\
91 +1. [[image:attach:image2021-4-27_13-51-12.png||thumbnail="true" height="250"]]
Confluence.Code.ConfluencePageClass[0]
Id
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1 -204941724
1 +204941686
Title
... ... @@ -1,1 +1,1 @@
1 -How to start the RecoGUI
1 +Reconstruction Guideline
URL
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1 -https://confluence.desy.de/spaces/P5I/pages/204941724/How to start the RecoGUI
1 +https://confluence.desy.de/spaces/P5I/pages/204941686/Reconstruction Guideline