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Last modified by flenners on 2025-06-24 16:56
From version 4.1
edited by flenners
on 2021-04-27 14:35
Change comment: There is no comment for this version
To version 1.1
edited by flenners
on 2021-04-27 14:20
Change comment: There is no comment for this version

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Page properties
Title
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1 -How to start the RecoGUI
1 +Reconstruction Guideline
Content
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2 2  
3 3  Terminal:
4 4  
5 -(% class="code" %)
6 -(((
7 7  salloc ~-~-partition=all ~-~-nodes=1 –time=06:00:00
8 -\\ssh max-bla123
9 -\\module load anaconda
10 -\\source activate ~~/envs/tomopy
11 -\\spyder&
12 -)))
13 13  
14 -\\
15 -
16 -\\
17 -
18 -{{code linenumbers="true" collapse="true"}}
19 -salloc --partition=all --nodes=1 –time=06:00:00
20 -
21 21  ssh max-bla123
22 22  
23 23  module load anaconda
24 24  
25 -source activate ~/envs/tomopy
11 +source activate ~~/envs/tomopy
26 26  
27 27  spyder&
28 -{{/code}}
29 29  
30 30  \\
31 31  
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93 93  
94 94  \\
95 95  
96 -Now you are on a different node [[image:http://confluence.desy.de/s/de_DE/7901/4635873c8e185dc5df37b4e2487dfbef570b5e2c/_/images/icons/emoticons/smile.svg||title="(Lächeln)" border="0" class="emoticon emoticon-smile"]].
81 +Now you are on a different node 🙂️.
97 97  
98 -\\
83 +You can also start another terminal e.g. if you want to 
99 99  
100 -You first have to **load the anaconda module:**
85 +And
101 101  
102 -(% class="code" %)
103 -(((
104 -module load anaconda/3
105 -\\
106 -)))
107 -
108 -and **activate your virtual environment**, depending on where you installed it:
109 -
110 -(% class="code" %)
111 -(((
112 -source activate ~~/envs/tomopy
113 -)))
114 -
115 -\\
116 -
117 -~~/ takes you back to your home directory. In this case, the environment "tomopy" was installed in the home directory in the folder "envs". 
118 -
119 -\\
120 -
121 -now you can **start spyder**:
122 -
123 -(% class="code" %)
124 -(((
125 -spyder&
126 -)))
127 -
128 -\\
129 -
130 -EXAMPLE: (virtual environment in "envs/p36"
131 -
132 132  [[image:attach:image2021-4-27_13-53-35.png||height="71"]]
133 133  
134 134  \\
135 135  
136 -You can also start another terminal e.g. if you want to look at your data / reconstructions in fiji.
137 -
138 -\\
139 -
140 -\\
141 -
142 -\\
143 -
144 -\\
91 +1. [[image:attach:image2021-4-27_13-51-12.png||thumbnail="true" height="250"]]
Confluence.Code.ConfluencePageClass[0]
Id
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1 -206806112
1 +204941686
Title
... ... @@ -1,1 +1,1 @@
1 -How to start the RecoGUI
1 +Reconstruction Guideline
URL
... ... @@ -1,1 +1,1 @@
1 -https://confluence.desy.de/spaces/P5I/pages/206806112/How to start the RecoGUI
1 +https://confluence.desy.de/spaces/P5I/pages/204941686/Reconstruction Guideline