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Last modified by flenners on 2025-06-24 16:56
From version 5.1
edited by flenners
on 2021-05-04 10:28
Change comment: There is no comment for this version
To version 1.1
edited by flenners
on 2021-04-27 14:20
Change comment: There is no comment for this version

Summary

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Title
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1 -How to start the RecoGUI
1 +Reconstruction Guideline
Content
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2 2  
3 3  Terminal:
4 4  
5 -(% class="code" %)
6 -(((
7 -salloc ~-~-partition=psx ~-~-nodes=1 –time=06:00:00
8 -\\ssh max-bla123
9 -\\module load anaconda
10 -\\source activate ~~/envs/tomopy
11 -\\spyder&
12 -)))
5 +salloc ~-~-partition=all ~-~-nodes=1 –time=06:00:00
13 13  
14 -\\
15 -
16 -\\
17 -
18 -{{code linenumbers="true" collapse="true"}}
19 -salloc --partition=psx --nodes=1 –time=06:00:00
20 -
21 21  ssh max-bla123
22 22  
23 23  module load anaconda
24 24  
25 -source activate ~/envs/tomopy
11 +source activate ~~/envs/tomopy
26 26  
27 27  spyder&
28 -{{/code}}
29 29  
30 30  \\
31 31  
... ... @@ -63,7 +63,7 @@
63 63  
64 64  (% class="code" %)
65 65  (((
66 -salloc ~-~-partition=psx ~-~-nodes=1 ~-~-time=06:00:00
51 +salloc ~-~-partition=all ~-~-nodes=1 ~-~-time=06:00:00
67 67  )))
68 68  
69 69  \\
... ... @@ -89,63 +89,18 @@
89 89  
90 90  [[image:attach:image2021-4-27_13-52-11.png||height="125"]]
91 91  
92 -Hint: Please use partition=psx, if you use =all, the connection might close while you are working if someone with higher priority needs the node you are working on.
93 -
94 94  \\
95 95  
96 -Now you are on a different node [[image:http://confluence.desy.de/s/de_DE/7901/4635873c8e185dc5df37b4e2487dfbef570b5e2c/_/images/icons/emoticons/smile.svg||title="(Lächeln)" border="0" class="emoticon emoticon-smile"]].
97 -
98 98  \\
99 99  
100 -You first have to **load the anaconda module:**
81 +Now you are on a different node 🙂️.
101 101  
102 -(% class="code" %)
103 -(((
104 -module load anaconda/3
105 -\\
106 -)))
83 +You can also start another terminal e.g. if you want to 
107 107  
108 -and **activate your virtual environment**, depending on where you installed it:
85 +And
109 109  
110 -(% class="code" %)
111 -(((
112 -source activate ~~/envs/tomopy
113 -)))
114 -
115 -\\
116 -
117 -~~/ takes you back to your home directory. In this case, the environment "tomopy" was installed in the home directory in the folder "envs". 
118 -
119 -\\
120 -
121 -now you can **start spyder**:
122 -
123 -(% class="code" %)
124 -(((
125 -spyder&
126 -)))
127 -
128 -\\
129 -
130 -EXAMPLE: (virtual environment in "envs/p36"
131 -
132 132  [[image:attach:image2021-4-27_13-53-35.png||height="71"]]
133 133  
134 134  \\
135 135  
136 -You can also start another terminal e.g. if you want to look at your data / reconstructions in fiji.
137 -
138 -\\
139 -
140 -Hint: You can check your partition via
141 -
142 -(% class="code" %)
143 -(((
144 -my-partitions
145 -)))
146 -
147 -You should have access to psx.
148 -
149 -[[image:attach:image2021-5-4_10-28-14.png]]
150 -
151 -\\
91 +1. [[image:attach:image2021-4-27_13-51-12.png||thumbnail="true" height="250"]]
Confluence.Code.ConfluencePageClass[0]
Id
... ... @@ -1,1 +1,1 @@
1 -206806124
1 +204941686
Title
... ... @@ -1,1 +1,1 @@
1 -How to start the RecoGUI
1 +Reconstruction Guideline
URL
... ... @@ -1,1 +1,1 @@
1 -https://confluence.desy.de/spaces/P5I/pages/206806124/How to start the RecoGUI
1 +https://confluence.desy.de/spaces/P5I/pages/204941686/Reconstruction Guideline