Changes for page 03a Reconstruction with Reco GUI
Last modified by flenners on 2026-02-04 17:25
Summary
-
Page properties (2 modified, 0 added, 0 removed)
-
Objects (1 modified, 0 added, 0 removed)
Details
- Page properties
-
- Author
-
... ... @@ -1,1 +1,1 @@ 1 -XWiki. flenners1 +XWiki.wirtenss - Content
-
... ... @@ -19,14 +19,12 @@ 19 19 20 20 **HOLOTOMO DATA** 21 21 22 -Hint: you have to perform the phase reconstruction of your projections first! This is usually done by beamline staff. Then you can continue:22 +Hint: you have to perform the phase reconstruction of your projections first! 23 23 24 24 Go to "Load" tab. Click on "Load normalized data" at the bottom of the page and select your phase reconstruced projections. 25 25 26 26 The common path is: ///asap3/petra3/gpfs/p05/YEAR/data/BEAMTIMEID/processed/SCANNAME/reco_~#~#// 27 27 28 -Click on one file and click open 29 - 30 30 You do not need to load any additional dark images. 31 31 32 32 Skip "Normalize, Minus Log, Rotate" in the Preperation Tab. The optional steps are still optional. (see below) ... ... @@ -97,69 +97,10 @@ 97 97 98 98 \\ 99 99 100 -How does a good rotation center look like? 101 - 102 -(% class="relative-table wrapped" style="width: 57.8179%;" %) 103 -|=((( 104 -good 105 -)))|=((( 106 -bad 107 -)))|=((( 108 -comment 109 -))) 110 -|((( 111 -(% class="content-wrapper" %) 112 -((( 113 -[[image:attach:image2022-11-14_14-17-45.png||height="250"]] 114 -))) 115 -)))|((( 116 -(% class="content-wrapper" %) 117 -((( 118 -[[image:attach:image2022-11-14_14-19-33.png||height="250"]] 119 -))) 120 -)))|((( 121 121 \\ 122 -))) 123 -|((( 124 -(% class="content-wrapper" %) 125 -((( 126 -[[image:attach:image2022-11-14_15-16-34.png||height="250"]] 127 -))) 128 -)))|((( 129 -(% class="content-wrapper" %) 130 -((( 131 -[[image:attach:image2022-11-14_15-7-13.png||height="250"]] 132 -))) 133 -)))|((( 134 -The ghosting effect on the edges is due to sample movement during the scan. 135 -))) 136 -|((( 137 -\\ 138 -)))|((( 139 -\\ 140 -)))|((( 141 -\\ 142 -))) 143 -|((( 144 -(% class="content-wrapper" %) 145 -((( 146 -[[image:attach:image2022-11-14_15-29-47.png||height="250"]] 147 -))) 148 -)))|((( 149 -(% class="content-wrapper" %) 150 -((( 151 -**[[image:attach:image2022-11-14_15-28-50.png||height="250"]]** 152 -))) 153 -)))|((( 154 -\\ 155 -))) 156 156 157 -[[image:attach:image2023-1-23_11-39-57.png||height="400"]] 158 - 159 159 \\ 160 160 161 -\\ 162 - 163 163 **Reconstruction Parameters. ** 164 164 165 165 When you found the correct rotation center, you can continue with the reconstruction.
- Confluence.Code.ConfluencePageClass[0]
-
- Id
-
... ... @@ -1,1 +1,1 @@ 1 - 3614573501 +284692086 - URL
-
... ... @@ -1,1 +1,1 @@ 1 -https://confluence.desy.de/spaces/P5I/pages/ 361457350/03a Reconstruction with Reco GUI1 +https://confluence.desy.de/spaces/P5I/pages/284692086/03a Reconstruction with Reco GUI