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Last modified by flenners on 2026-02-04 17:25
From version 14.1
edited by flenners
on 2024-06-25 11:43
Change comment: There is no comment for this version
To version 12.1
edited by flenners
on 2024-05-24 14:52
Change comment: There is no comment for this version

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1 -== {{id name="03aReconstructionwithRecoGUI-Preperation:"/}}Preperation: ==
2 -
3 -Terminal:
4 -
5 -\\
6 -
7 -salloc ~-~-partition=psx ~-~-nodes=1 ~-~-time=06:00:00
8 -\\(if you need gpu: ~-~-constraint=P100 )
9 -
10 -//Answer~:// salloc: job [//number//] queued and waiting for resources
11 -
12 - salloc: job [number] has been allocated resources
13 -
14 - salloc: Granted job allocation [number]
15 -
16 - salloc: Waiting for resource configuration
17 -
18 - salloc: Nodes //max-wn035// are ready for job  (name of your node; code after “max-“ can vary, in this example wn035, if you do not get a specific node name, repeat salloc command)
19 -
20 -(% class="code" %)
21 -(((
22 -ssh max-wn035 (shell to your node)
23 -\\module load maxwell mamba
24 -)))
25 -
26 -(% class="code" %)
27 -(((
28 -
29 -. mamba-init (. is important! never do without, this can crash your FastX)
30 -\\mamba activate /asap3/petra3/gpfs/common/p05/nano/envs/mamba
31 -)))
32 -
33 -
34 -spyder &
35 -\\~-~-~-~-~-~-
36 -\\\\Spyder will open.
37 -
38 -On the right, choose "file explorer". Navigate to your beamtime folder and find processed/scripts/RecoGUI:
39 -
40 -[[image:attach:image2022-11-1_13-7-14.png||height="250"]]
41 -
42 -\\
43 -
44 -Important: you need to be in the right folder, else the script will not be able to find a file in the first cell of the script
45 -
46 -\\
47 -
48 -Open RecoGUI.py by double clicking the file and click "Run" (green arrow)
49 -
50 -\\
51 -
52 -\\
53 -
54 54  = {{id name="03aReconstructionwithRecoGUI-LoadingData"/}}Loading Data
55 55  \\ =
56 56  
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152 152  
153 153  How does a good rotation center look like?
154 154  
155 -(% class="relative-table wrapped" style="width: 37.5112%;" %)
102 +(% class="relative-table wrapped" style="width: 57.8179%;" %)
156 156  |=(((
157 157  good
158 158  )))|=(((
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Confluence.Code.ConfluencePageClass[0]
Id
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1 -236814957
1 +361457350
URL
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1 -https://confluence.desy.de/spaces/P5I/pages/236814957/03a Reconstruction with Reco GUI
1 +https://confluence.desy.de/spaces/P5I/pages/361457350/03a Reconstruction with Reco GUI