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Wiki source code of User Guide: NanoCT

Version 4.1 by flenners on 2022-01-13 12:20
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1 Guide for P05 Nano Users
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5 1. Preparation of Beamtime
6 1. During Beamtime:
7 11. How to start a scan
8 11. Emergency sheet
9 1. Reconstruction Guide
10 1. Possible Analysis tools
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14 References:
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16 TXM setup with Zernike phase contrast:
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18 ~1. S. Flenner, M. Storm, A. Kubec, E. Longo, F. Doring, D. M. Pelt, C. David, M. Muller, and I. Greving, "Pushing the temporal resolution in absorption and Zernike phase contrast nanotomography: Enabling fast in situ experiments," J. Synchrotron Radiat. 27, 1339–1346 (2020).
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22 Zernike phase contrast with large field of view (ROI scans):
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24 E. Longo, L. Sancey, S. Flenner, A. Kubec, A. Bonnin, C. David, M. Müller, and I. Greving, "X-ray Zernike phase contrast tomography: 3D ROI visualization of mm-sized mice organ tissues down to sub-cellular components," Biomed. Opt. Express 11(10), 5506 (2020).
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28 Holotomography setup:
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30 S. Flenner, A. Kubec, C. David, M. Storm, C. F. Schaber, F. Vollrath, M. Müller, I. Greving, and J. Hagemann, "Hard X-ray nano-holotomography with a Fresnel zone plate," Opt. Express 28(25), 37514 (2020). [[https:~~/~~/doi.org/10.1364/OE.406074>>url:https://doi.org/10.1364/OE.406074||shape="rect"]]
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34 Machine learning denoising:
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36 Flenner, S., Bruns, S., Longo, E., Parnell, A. J., Stockhausen, K. E., Müller, M., & Greving, I. (2022). Machine learning denoising of high-resolution X-ray nanotomography data. Journal of Synchrotron Radiation, 29(1), 230–238. [[https:~~/~~/doi.org/10.1107/s1600577521011139>>url:https://doi.org/10.1107/s1600577521011139||shape="rect"]]