Changes for page Access data with ImageJ

Last modified by fwilde on 2018/12/18 12:01
From version 10.1
edited by fwilde
on 2016/07/28 08:49
Change comment: There is no comment for this version
To version 14.1
edited by fwilde
on 2016/09/15 16:34
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -7,6 +7,7 @@
7 7  
8 8  Each image contains a header consisting of the information needed to open the binary raw file. To read the header open the first line of the dataset (e.g. with the {{code language="none"}}head{{/code}} command in Linux or in an editor). The header information is subdivided with underscore symbols, like e.g. {{code language="none"}}PC_2_U_2000_2000_{{/code}}. The first item describes on what kind of computer the data was generated. The second item shows the dimensionailty of the data (2 for an image). The next item is a letter (either B U I L or F ) and describes the data type. A list of te data types can be found in the table below. The last items give the length of the dataset in each dimension. The total header length is not fixed and generally depends on the image dimensions.and count all letters until the carriage return. Add 2 to this number (carriage return has two letters) and this is the header length - e.g. {{code language="none"}}PC_2_U_2000_2000_{{/code}} has 17 letters ansd thus results in a header length of 19.
9 9  
10 +(% class="wrapped" %)
10 10  |=(((
11 11  suffix
12 12  )))|=(((
... ... @@ -64,7 +64,7 @@
64 64  
65 65  = {{id name="AccessdatawithImageJ-UsetheImageJplugins"/}}Use the ImageJ plugins =
66 66  
67 -In order to read the P05 data with our plugin, you have at least to install the {{code language="none"}}read_dat.class{{/code}}. Simply copy the file into your local ImageJ plugins folder. If you want to be able to open the data with the standard {{code language="none"}}File -> Open...{{/code}} Menu button, you addtionally have to install the ##(% style="color: rgb(0,0,0);" %)HandeExtraFileTypes.jar(%%)##(% style="color: rgb(0,0,0);" %). With this plugin you can also import an image stack as a virtual stack.
68 +In order to read the P05 data with our plugin, you have at least to install the {{code language="none"}}read_dat.class{{/code}}. Simply copy the file into your local ImageJ plugins folder. If you want to be able to open the data with the standard {{code language="none"}}File -> Open...{{/code}} Menu button, you addtionally have to install the ##(% style="color: rgb(0,0,0);" %)HandeExtraFileTypes.class(%%)##(% style="color: rgb(0,0,0);" %). With this plugin you can also import an image stack as a virtual stack.
68 68  
69 69  {{info}}
70 70  There appear to be some issues with our plugins using Fiji (ImageJ with extended plugins). If you are using Fiji and encounter problems with our plugins try using ImageJ instead.
... ... @@ -75,10 +75,10 @@
75 75  
76 76  = {{id name="AccessdatawithImageJ-Downloads"/}}Downloads =
77 77  
78 -{{panel titleBGColor="blue" title="ImageJ Plugins" borderColor="blue" titleColor="white"}}
79 +{{panel borderColor="blue" titleColor="white" titleBGColor="blue" title="ImageJ Plugins"}}
79 79  **Binary files to copy to your plugin folder:**
80 80  
81 -[[attach:HandleExtraFileTypes.jar]]
82 +[[attach:HandleExtraFileTypes.class]]
82 82  
83 83  [[attach:read_dat.class]]
84 84  
Confluence.Code.ConfluencePageClass[0]
Id
... ... @@ -1,1 +1,1 @@
1 -42350815
1 +116602068
URL
... ... @@ -1,1 +1,1 @@
1 -https://confluence.desy.de/spaces/P5I/pages/42350815/Access data with ImageJ
1 +https://confluence.desy.de/spaces/P5I/pages/116602068/Access data with ImageJ