Changes for page Access data with ImageJ

Last modified by fwilde on 2018/12/18 12:01
From version 8.1
edited by fwilde
on 2016/07/28 08:40
Change comment: There is no comment for this version
To version 10.1
edited by fwilde
on 2016/07/28 08:49
Change comment: There is no comment for this version

Summary

Details

Page properties
Content
... ... @@ -10,7 +10,7 @@
10 10  |=(((
11 11  suffix
12 12  )))|=(((
13 -data type
13 +ImageJ data type
14 14  )))|=(((
15 15  header tag
16 16  )))
... ... @@ -17,7 +17,7 @@
17 17  |(((
18 18  
19 19  )))|(((
20 -8 bit integer
20 +8 bit
21 21  )))|(((
22 22  B
23 23  )))
... ... @@ -24,7 +24,7 @@
24 24  |(((
25 25  .img .dar .ref
26 26  )))|(((
27 -16 bit unsigned integer
27 +16 bit Unsigned
28 28  )))|(((
29 29  U
30 30  )))
... ... @@ -31,7 +31,7 @@
31 31  |(((
32 32  
33 33  )))|(((
34 -16 bit integer
34 +16 bit Signed
35 35  )))|(((
36 36  I
37 37  )))
... ... @@ -38,7 +38,7 @@
38 38  |(((
39 39  
40 40  )))|(((
41 -32 bit integer
41 +32 bit Signed
42 42  )))|(((
43 43  L
44 44  )))
... ... @@ -45,7 +45,7 @@
45 45  |(((
46 46  .sli .sin .sis
47 47  )))|(((
48 -32 bit float
48 +32 bit Real
49 49  )))|(((
50 50  F
51 51  )))
... ... @@ -52,8 +52,14 @@
52 52  
53 53  = {{id name="AccessdatawithImageJ-Importrawdatadirectly"/}}Import raw data directly =
54 54  
55 -With ImageJ you can import binary data directly using {{code language="none"}}File > Import > Raw...{{/code}}. To import the raw data directly, read the header of the file you want to open, enter the according values and check the box {{code language="none"}}Little-endian byte order{{/code}}. You can choose to {{code language="none"}}Open all files in folder{{/code}} if you want to open a stack with all file in a folder. **Attention**: {{code language="none"}}Use virtual stack{{/code}} does not work with this kind of import. To open a virtual stack you need to use our plugins.
55 +With ImageJ you can import binary data directly using {{code language="none"}}File > Import > Raw...{{/code}}. To import the raw data directly, read the header of the file you want to open, enter the values:
56 56  
57 +* Image type (see table ImageJ data type)
58 +* Width and height (last two numbers in header)
59 +* Offset to first image (i.e. header length)
60 +
61 +and check the box {{code language="none"}}Little-endian byte order{{/code}}. You can choose to {{code language="none"}}Open all files in folder{{/code}} if you want to open a stack with all file in a folder. **Attention**: {{code language="none"}}Use virtual stack{{/code}} does not work with this kind of import. To open a virtual stack you need to use our plugins.
62 +
57 57  [[image:attach:imagej_raw_import.png||height="250"]]
58 58  
59 59  = {{id name="AccessdatawithImageJ-UsetheImageJplugins"/}}Use the ImageJ plugins =
Confluence.Code.ConfluencePageClass[0]
Id
... ... @@ -1,1 +1,1 @@
1 -37489288
1 +42350815
URL
... ... @@ -1,1 +1,1 @@
1 -https://confluence.desy.de/spaces/P5I/pages/37489288/Access data with ImageJ
1 +https://confluence.desy.de/spaces/P5I/pages/42350815/Access data with ImageJ