Wiki source code of Collection of HDF5 sample data from different beamlines
Last modified by rangeadm on 2025/04/23 14:53
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| author | version | line-number | content |
|---|---|---|---|
| 1 | {{toc/}} | ||
| 2 | |||
| 3 | |||
| 4 | |||
| 5 | == how to find the public data in the gamma portal == | ||
| 6 | |||
| 7 | |||
| 8 | [[image:attach:image2023-9-28_16-42-5.png||height="250"]] | ||
| 9 | |||
| 10 | |||
| 11 | == How to look at the sample scripts ? == | ||
| 12 | |||
| 13 | for some Beamlines implemented an **online execution option** for the sample scripts | ||
| 14 | |||
| 15 | see the [[ Video how to use the tool>>https://syncandshare.desy.de/index.php/s/4qYwkWqQW2czj3x]] [[~[~[image:1726650353847-977.png~|~|height="137" width="290"~]~]>>https://syncandshare.desy.de/index.php/s/4qYwkWqQW2czj3x]] | ||
| 16 | |||
| 17 | and the link to the tool : [[https:~~/~~/max-sas.desy.de/>>url:https://max-sas.desy.de/]] | ||
| 18 | |||
| 19 | |||
| 20 | == FL21 == | ||
| 21 | |||
| 22 | === **Data: ** === | ||
| 23 | |||
| 24 | /asap3/flash/gpfs/fl21/2022/data/11015507/raw/hdf/offline/fl2user2~/~/FLASH2_USER2_stream_2_run41519_file1_20211019T152756.1 | ||
| 25 | |||
| 26 | === **analysis file **: === | ||
| 27 | |||
| 28 | /asap3/flash/gpfs/fl21/2022/data/11015507/processed/Example_analysis_THz_streaking_run41519.ipynb | ||
| 29 | |||
| 30 | {{view-file att--filename="Example_analysis_THz_streaking_run41519.pdf" display="thumbnail"/}} | ||
| 31 | |||
| 32 | === **description**: === | ||
| 33 | |||
| 34 | (% style="color:#333333" %)Experiment: THz streaking(%%) | ||
| 35 | (% style="color:#333333" %)Beamline: FL21(%%) | ||
| 36 | (% style="color:#333333" %)Instrument: THz streaking (%%) | ||
| 37 | (% style="color:#333333" %)Sample: Neon | ||
| 38 | |||
| 39 | The data was taken as part of the THz streaking photon diagnostic shifts. it contains GMD data and Time of Flight data ( recorded with the FLASH GHz ADCs) as well as beam arrival time (BAM) data. | ||
| 40 | |||
| 41 | we show how to read and interpolate the GMD data, look at the TOF data and sort a delay scan with the BAM | ||
| 42 | |||
| 43 | === **suggested reading:** === | ||
| 44 | |||
| 45 | (% style="color:#172b4d" %)R. Ivanov, (% class="nowrap" %)I. Bermúdez Macias(%%), (% class="nowrap" %)J. Liu(%%), (% class="nowrap" %)G. Brenner(%%), (% class="nowrap" %)J. Roensch-Schulenburg(%%), (% class="nowrap" %)G. Kurdi(%%), (% class="nowrap" %)U. Fruehling, K, Wenig(%%), (% class="nowrap" %)S Walther(%%), (% class="nowrap" %)A Dimitriou(% class="reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %), (% class="nowrap reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %)M Drescher(% class="reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %), (% class="nowrap reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %)I P Sazhina(% class="reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %), (% class="nowrap reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %)A K Kazansky(% class="reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %), (% class="nowrap reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %)N M Kabachnik(% class="reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %) and (% class="nowrap reveal-container reveal-content reveal-enabled reveal-no-animation reveal-plus-icon" %)S. Düsterer(%%) | ||
| 46 | (% style="text-align:left" %)//Single-shot temporal characterization of XUV pulses with duration from ~~10 fs to ~~350 fs at FLASH//(%%) | ||
| 47 | (% style="color:#172b4d" %)J. Phys. B: At. Mol. Opt. Phys. (2020)(%%) | ||
| 48 | (% class="Object" %)__[[https:~~/~~/doi.org/10.1088/1361-6455/ab9c38>>url:https://doi.org/10.1088/1361-6455/ab9c38||rel="nofollow" shape="rect" class="external-link"]]__ | ||
| 49 | |||
| 50 | Dennis Mayer, Fabiano Lever and Markus Gühr, ** ** | ||
| 51 | //Data analysis procedures for time-resolved x-ray photoelectron spectroscopy at a SASE free-electron-laser,// | ||
| 52 | Phys. B: At. Mol. Opt. Phys. **55**, 054002 (2022); [[https:~~/~~/doi.org/10.1088/1361-6455/ac3c91>>url:https://doi.org/10.1088/1361-6455/ac3c91||rel="nofollow" shape="rect" class="external-link"]] | ||
| 53 | |||
| 54 | |||
| 55 | == FL24 == | ||
| 56 | |||
| 57 | === **Data: ** === | ||
| 58 | |||
| 59 | /asap3/flash/gpfs/fl24/2023/data/11017906/raw/hdf/offline/fl2user1/ | ||
| 60 | |||
| 61 | |||
| 62 | === **analysis file **: === | ||
| 63 | |||
| 64 | asap3/flash/gpfs/fl24/2023/data/11017906/shared/data_loading.ipynb | ||
| 65 | |||
| 66 | {{view-file att--filename="data_loading.pdf" display="thumbnail"/}} | ||
| 67 | |||
| 68 | |||
| 69 | and other python files in this folder | ||
| 70 | |||
| 71 | === **description**: === | ||
| 72 | |||
| 73 | (% style="color:#333333" %)Experiment: Photoelectron spectroscopy(%%) | ||
| 74 | (% style="color:#333333" %)Beamline: FL24(%%) | ||
| 75 | (% style="color:#333333" %)Instrument: URSAPQ(%%) | ||
| 76 | (% style="color:#333333" %)Sample: ? | ||
| 77 | |||
| 78 | === **suggested reading:** === | ||
| 79 | |||
| 80 | Jan Metje, Fabiano Lever, Dennis Mayer, Richard James Squibb, Matthew S. Robinson, Mario Niebuhr, Raimund Feifel, Stefan Düsterer, Markus Gühr, | ||
| 81 | //URSA-PQ: A Mobile and Flexible Pump-Probe Instrument for Gas Phase Samples at the FLASH Free Electron Laser//, | ||
| 82 | Appl. Sci. **10**, 7882 (2020); [[http:~~/~~/dx.doi.org/10.3390/app10217882>>url:http://dx.doi.org/10.3390/app10217882||shape="rect" style="text-decoration: none;"]] | ||
| 83 | |||
| 84 | == PG1 == | ||
| 85 | |||
| 86 | === **Data:** === | ||
| 87 | |||
| 88 | /asap3/flash/gpfs/pg1/2023/data/11017909/raw/hdf/offline/fl1user3 | ||
| 89 | |||
| 90 | (% style="color:#333333" %)runs 43622 and 43624 (25 GB in total) | ||
| 91 | |||
| 92 | === **analysis file **: === | ||
| 93 | |||
| 94 | asap3/flash/gpfs/pg1/2023/data/11017909/processed/[[attach:PG1_data_analysis_Si_example_FAB.ipynb]] (version using the new FAB library) | ||
| 95 | |||
| 96 | |||
| 97 | asap3/flash/gpfs/pg1/2023/data/11017909/processed/previous_analysis/[[attach:PG1_data_analysis_Si_example.ipynb]] (version using the depreciated flashdaqhdfutils library ) | ||
| 98 | |||
| 99 | {{view-file att--filename="PG1_data_analysis_Si_example.pdf" display="thumbnail"/}} | ||
| 100 | |||
| 101 | === | ||
| 102 | (% style="color:#333333" %)** Description:**(%%) === | ||
| 103 | |||
| 104 | (% style="color:#333333" %) Experiment: time-resolved RIXS(%%) | ||
| 105 | (% style="color:#333333" %) Beamline: PG1(%%) | ||
| 106 | (% style="color:#333333" %) Instrument: TRIXS end station(%%) | ||
| 107 | (% style="color:#333333" %) Sample: Si(%%) | ||
| 108 | \\(% style="color:#333333" %) Sample was pumped with an optical laser and probed via soft X-ray RIXS by(%%) | ||
| 109 | (% style="color:#333333" %) varying the time delay between the optical laser and FEL.(%%) | ||
| 110 | (% style="color:#333333" %) Time delay was changed repeatedly from 2935 ps to 2939 ps (these are the delay(%%) | ||
| 111 | (% style="color:#333333" %) line encoder values of the optical laser ) in steps of 400fs, 1000 samples per(%%) | ||
| 112 | (% style="color:#333333" %) delay step.(%%) | ||
| 113 | \\(% style="color:#333333" %) RIXS images were collected via CCD camera (not full chip, only narrow region of(%%) | ||
| 114 | (% style="color:#333333" %) interest), operated in long exposure mode of 5 sec (integrating several FEL(%%) | ||
| 115 | (% style="color:#333333" %) trains per image).(%%) | ||
| 116 | |||
| 117 | |||
| 118 | === **suggested reading:** === | ||
| 119 | |||
| 120 | S. Dziarzhytski, M. Biednov, B. Dicke, A. Wang, P. S. Miedema, R. Y. Engel, J. O. Schunck, H. Redlin, H. Weigelt, F. Siewert, C. Behrens, M. Sinha, A. Schulte, B. Grimm-Lebsanft, S. G. Chiuzbăian, W. Wurth, M. Beye, M. Rübhausen, and G. Brenner, | ||
| 121 | //The TRIXS end-station for femtosecond time-resolved resonant inelastic x-ray scattering experiments at the soft x-ray free-electron laser FLASH//, | ||
| 122 | Struct. Dyn. **7**, 054301 (2020); [[https:~~/~~/doi.org/10.1063/4.0000029>>url:https://doi.org/10.1063/4.0000029||shape="rect" style="text-decoration: none;"]] | ||
| 123 | |||
| 124 | |||
| 125 | |||
| 126 | == PG2 / HEXTOF == | ||
| 127 | |||
| 128 | === **Data:** === | ||
| 129 | |||
| 130 | /asap3/flash/gpfs/pg2/2023/data/11019101/raw/hdf/offline/fl1user3/ | ||
| 131 | |||
| 132 | Runs for standard example of hextof workflow (from Spin-Gd/W(110) beamtime, ID 11013410): | ||
| 133 | |||
| 134 | * 44762 - chessy sample for PEEM mode calibration | ||
| 135 | * 44797 - energy calibration | ||
| 136 | * 44798 and 44799 - optical spot profile with two different fluences | ||
| 137 | * 44824, 44825, 44826 and 44827 - trMM data | ||
| 138 | |||
| 139 | (% style="color:#333333" %)(3.5 GB in total) | ||
| 140 | |||
| 141 | ===== **analysis file**: ===== | ||
| 142 | |||
| 143 | /asap3/flash/gpfs/pg2/2023/data/11019101/processed/4_hextof_workflow.ipynb | ||
| 144 | |||
| 145 | __ __ | ||
| 146 | |||
| 147 | Runs for example of BAM corrections (from H. Bentmann beamtime, ID 11013426): | ||
| 148 | |||
| 149 | * 44455 - energy calibration for W4f core level lines | ||
| 150 | * 44498 - trXPS dataset - t0 using side bands on W4f for BAM correction | ||
| 151 | |||
| 152 | (0.9 GB in total) | ||
| 153 | |||
| 154 | ===== **analysis file**: ===== | ||
| 155 | |||
| 156 | /asap3/flash/gpfs/pg2/2023/data/11019101/processed/hextof_workflow_bam_correction.ipynb - coming soon | ||
| 157 | |||
| 158 | |||
| 159 | === | ||
| 160 | (% style="color:#333333" %)** Description:**(%%) === | ||
| 161 | |||
| 162 | (% style="color:#333333" %) Experiment: time-resolved momentum microscopy(%%) | ||
| 163 | (% style="color:#333333" %) Beamline: PG2(%%) | ||
| 164 | (% style="color:#333333" %) Instrument: HEXTOF(%%) | ||
| 165 | (% style="color:#333333" %) Samples: Chessy and Gd/W(110)(%%) | ||
| 166 | |||
| 167 | |||
| 168 | Run 44762 was measured with a Hg lamp on the test "Chessy" sample to calibrate FoV in µm in the PEEM mode. | ||
| 169 | |||
| 170 | Runs 44798 and 44799 - optical spot profile measured in PEEM mode under the same settings as run 44762 | ||
| 171 | with two different attenuations of the pump laser to determine the spot size of the pump laser. | ||
| 172 | This is needed to estimate pump fluence during trMM runs (44824, 44825, 44826 and 44827) using values | ||
| 173 | of I,,0,, monitor of the pump laser. | ||
| 174 | |||
| 175 | Runs 44797 - measured with 36.2 eV in k-mode with manually variable sample bias from 28 to 32V by 1 V | ||
| 176 | every 2000 shots to calibrate the energy scale. | ||
| 177 | This energy calibration has to be used for trMM data. | ||
| 178 | |||
| 179 | Runs 44824, 44825, 44826 and 44827 were measured (% style="color:#333333" %)from Gd/W(110) sample which was pumped with | ||
| 180 | a 1030 nm s-polarized optical laser and probed with 36.2 eV for time-resolved momentum microscopy (trARPES) | ||
| 181 | varying the time delay between the optical laser and FEL. The time delay was changed in ZigZag manner repeatedly | ||
| 182 | from 1462.00 ps to 1464.85 ps with 200 steps and 1 sec waiting time at each step. | ||
| 183 | |||
| 184 | === **suggested reading:** === | ||
| 185 | |||
| 186 | 1. D. Kutnyakhov, R.P. Xian, M. Dendzik, M. Heber, F. Pressacco, S.Y. Agustsson, L. Wenthaus, H. Meyer, S. Gieschen, G. Mercurio, A. Benz, K. Bühlman, S. Däster, R. Gort, D. Curcio, K. Volckaert, M. Bianchi, Ch. Sanders, J A. Miwa, S. Ulstrup, A. Oelsner, C. Tusche, Y.-J. Chen, D. Vasilyev, K. Medjanik, G. Brenner, S. Dziarzhytski, H. Redlin, B. Manschwetus, S. Dong, J. Hauer, L. Rettig, F. Diekmann, K. Rossnagel, J. Demsar, H.-J. Elmers, Ph. Hofmann, R. Ernstorfer, G. Schönhense, Y. Acremann, and W. Wurth, | ||
| 187 | //Time- and momentum-resolved photoemission studies using time-of-flight momentum microscopy at a free-electron laser//, | ||
| 188 | Rev. Sci. Instrum. **91**, 013109 (2020); | ||
| 189 | [[https:~~/~~/doi.org/10.1063/1.5118777>>url:https://doi.org/10.1063/1.5118777||rel="nofollow" shape="rect" class="external-link"]] | ||
| 190 | 1. Single Event Data Frame Processor used as a backend to handle photoelectron resolved data streams | ||
| 191 | [[https:~~/~~/github.com/OpenCOMPES/sed>>url:https://github.com/OpenCOMPES/sed||shape="rect"]] | ||
| 192 | 1. Tutorial of typical data analysis workflow using sample data | ||
| 193 | [[https:~~/~~/opencompes.github.io/sed/tutorial/4_hextof_workflow.html#>>https://opencompes.github.io/sed/tutorial/4_hextof_workflow.html#]] |